C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: elongation factor Tu GTP binding domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108883 EFTUD2 9606 - 17:44849943-44899662 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000402521 EFTUD2-004 44851120-44899445 protein_coding
  ENST00000426333 EFTUD2-002 44849943-44899662 protein_coding
  ENST00000585616 EFTUD2-022 44860454-44865268 processed_transcript
  ENST00000585794 EFTUD2-023 44862760-44865232 retained_intron
  ENST00000586276 EFTUD2-008 44850810-44863595 retained_intron
  ENST00000586654 EFTUD2-021 44862790-44868399 retained_intron
  ENST00000586875 EFTUD2-016 44880477-44881843 retained_intron
  ENST00000587914 EFTUD2-024 44862753-44864062 retained_intron
  ENST00000587957 EFTUD2-019 44875633-44879590 retained_intron
  ENST00000588340 EFTUD2-028 44854975-44857639 retained_intron
  ENST00000588374 EFTUD2-015 44876089-44894497 nonsense_mediated_decay
  ENST00000589211 EFTUD2-029 44886663-44892329 processed_transcript
  ENST00000589475 EFTUD2-018 44879516-44880630 retained_intron
  ENST00000589769 EFTUD2-026 44851257-44854662 nonsense_mediated_decay
  ENST00000589825 EFTUD2-010 44883556-44899445 retained_intron
  ENST00000590105 EFTUD2-013 44894134-44899403 retained_intron
  ENST00000590124 EFTUD2-025 44851047-44857121 protein_coding
  ENST00000590367 EFTUD2-007 44850916-44873167 retained_intron
  ENST00000590977 EFTUD2-009 44850917-44859649 retained_intron
  ENST00000591382 EFTUD2-006 44850916-44899368 protein_coding
  ENST00000591856 EFTUD2-020 44864970-44872526 nonsense_mediated_decay
  ENST00000592408 EFTUD2-012 44885256-44899403 retained_intron
  ENST00000592576 EFTUD2-003 44850866-44899431 protein_coding
  ENST00000592701 EFTUD2-014 44885287-44899049 protein_coding
  ENST00000593072 EFTUD2-011 44883140-44899403 protein_coding
  ENST00000593200 EFTUD2-017 44875939-44881835 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402521ENST00000426333ENST00000589825ENST00000590124ENST00000591382ENST00000592576
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402521 12.476±0.00 9.376±0.00 2.383±0.00 5.983±1.57 4.871±0.88 4.718±2.88 4.781±3.08 3.151±0.14 4.616±0.40 10.796±7.24 10.575±2.99 12.308±3.11 16.322±0.00
ENST00000426333 N/A N/A N/A N/A 1.817±0.00 2.542±0.00 N/A N/A N/A N/A 3.033±0.00 7.960±2.55 N/A
ENST00000589825 N/A N/A 12.509±0.00 18.722±0.00 21.226±0.00 9.707±0.00 8.594±0.00 13.691±0.00 18.896±0.00 6.872±0.00 50.675±0.00 N/A N/A
ENST00000590124 N/A 23.885±0.00 N/A N/A N/A N/A 15.757±0.00 N/A N/A N/A N/A N/A N/A
ENST00000591382 N/A N/A N/A N/A N/A N/A 1.251±0.00 N/A N/A N/A 19.787±0.00 9.280±0.00 N/A
ENST00000592576 7.076±0.00 11.413±0.00 N/A 10.156±0.00 4.839±0.00 5.884±0.00 9.414±0.00 4.806±0.00 5.660±0.00 14.169±0.00 13.297±2.84 10.254±2.08 17.057±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U4 CIL_0006U4_0001 CGP 17:44798448-44850480
CIL_0006U5 CIL_0006U5_0001 CGP 17:44846353-44899662
CIL_0006UA CIL_0006UA_0001 CGP 17:44849943-44905390

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006397 TAS mRNA processing
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0015030 IDA Cajal body
GO:0016020 IDA membrane
GO:0016607 IDA nuclear speck
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012261 eftud2 elongation factor Tu GTP binding domain containing 2 protein_coding Danio_rerio
ENSMUSG00000020929 Eftud2 elongation factor Tu GTP binding domain containing 2 protein_coding Mus_musculus

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