C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor Tu GTP binding domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592576 EFTUD2-003 ENSG00000108883 9606 - 17:44850866-44899431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000592576
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000592576 7.076±0.00 11.413±0.00 10.156±0.00 4.839±0.00 5.884±0.00 9.414±0.00 4.806±0.00 5.660±0.00 14.169±0.00 13.297±2.84 10.254±2.08 17.057±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U4 CIL_0006U4_0001 CGP 17:44798448-44850480
CIL_0006U5 CIL_0006U5_0001 CGP 17:44846353-44899662
CIL_0006UA CIL_0006UA_0001 CGP 17:44849943-44905390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003924 IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006397 TAS mRNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0015030 IDA Cajal body
GO:0016020 IDA membrane
GO:0016607 IDA nuclear speck
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173679 Eftud2-012 protein_coding Mus_musculus 0 3995
ENSMUST00000107060 Eftud2-001 protein_coding Mus_musculus 0 3417
ENSMUST00000021306 Eftud2-002 protein_coding Mus_musculus 0 3417
ENSMUST00000141273 Eftud2-007 retained_intron Mus_musculus 0 1214
ENSMUST00000131678 Eftud2-006 retained_intron Mus_musculus 0 736
ENSMUST00000123833 Eftud2-003 retained_intron Mus_musculus 0 601
ENSMUST00000138483 Eftud2-010 nonsense_mediated_decay Mus_musculus 0 590
ENSMUST00000132543 Eftud2-008 nonsense_mediated_decay Mus_musculus 0 514
ENSMUST00000147368 Eftud2-005 retained_intron Mus_musculus 0 484
ENSMUST00000143323 Eftud2-009 retained_intron Mus_musculus 0 453
ENSMUST00000173974 Eftud2-011 retained_intron Mus_musculus 0 246
ENSMUST00000148209 Eftud2-004 retained_intron Mus_musculus 3.00018e-42 178
ENSMUST00000172611 Eftud2-013 protein_coding Mus_musculus 1e-27 130

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