C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: elongation factor Tu GTP binding domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020929 Eftud2 10090 - 11:102838473-102880985 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021306 Eftud2-002 102838473-102880967 protein_coding
  ENSMUST00000107060 Eftud2-001 102838473-102880985 protein_coding
  ENSMUST00000123833 Eftud2-003 102865862-102880964 retained_intron
  ENSMUST00000131678 Eftud2-006 102849194-102860221 retained_intron
  ENSMUST00000132543 Eftud2-008 102838838-102841238 nonsense_mediated_decay
  ENSMUST00000138483 Eftud2-010 102862611-102877690 nonsense_mediated_decay
  ENSMUST00000141273 Eftud2-007 102840211-102847979 retained_intron
  ENSMUST00000143323 Eftud2-009 102839450-102840675 retained_intron
  ENSMUST00000147368 Eftud2-005 102869935-102877715 retained_intron
  ENSMUST00000148209 Eftud2-004 102876964-102880935 retained_intron
  ENSMUST00000172611 Eftud2-013 102838477-102844218 protein_coding
  ENSMUST00000173679 Eftud2-012 102838801-102877714 protein_coding
  ENSMUST00000173974 Eftud2-011 102863865-102865969 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021306ENSMUST00000107060ENSMUST00000138483ENSMUST00000141273ENSMUST00000143323ENSMUST00000147368ENSMUST00000173679
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021306 3.365±0.00 N/A 2.420±0.00 N/A N/A N/A 3.149±0.47 2.991±0.26 4.606±2.63 N/A 1.560±0.30 6.424±0.00 N/A 5.738±2.23
ENSMUST00000107060 17.275±4.45 4.120±0.54 22.271±3.36 38.234±10.49 10.678±3.17 4.408±0.73 8.187±2.36 12.342±2.33 18.503±18.42 18.562±2.39 6.409±0.90 14.265±6.89 28.266±9.81 17.026±5.23
ENSMUST00000138483 N/A N/A N/A 52.913±0.00 N/A N/A N/A N/A N/A N/A N/A 42.442±0.00 75.688±19.13 N/A
ENSMUST00000141273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.995±7.59 61.611±10.36 35.932±0.00
ENSMUST00000143323 N/A 34.139±6.63 N/A N/A 19.177±0.00 N/A N/A N/A N/A 29.769±2.47 N/A N/A N/A N/A
ENSMUST00000147368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 56.332±0.00 N/A N/A
ENSMUST00000173679 6.172±0.00 5.117±1.46 N/A N/A 8.207±2.36 5.172±1.12 N/A 4.367±1.98 3.288±0.60 N/A N/A 14.235±3.84 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0006U5 CIL_0006U5_0002 CGP 11:102835849-102880985
CIL_0006UA CIL_0006UA_0002 CGP 11:102838473-102885216

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0003924 IEA GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006397 IEA mRNA processing
GO:0006414 IEA translational elongation
GO:0008380 IEA RNA splicing
GO:0015030 IEA Cajal body
GO:0016020 IEA membrane
GO:0016607 IEA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012261 eftud2 elongation factor Tu GTP binding domain containing 2 protein_coding Danio_rerio
ENSG00000108883 EFTUD2 elongation factor Tu GTP binding domain containing 2 protein_coding Homo_sapiens

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