C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000110693 SOX6 9606 - 11:15966449-16739591 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316399 SOX6-001 15966449-16341269 protein_coding
  ENST00000396356 SOX6-201 15966449-16476388 protein_coding
  ENST00000524520 SOX6-015 16465791-16738643 processed_transcript
  ENST00000524650 SOX6-013 16049782-16111869 processed_transcript
  ENST00000525259 SOX6-016 16476338-16739591 processed_transcript
  ENST00000525835 SOX6-017 16465781-16607727 processed_transcript
  ENST00000526673 SOX6-010 16318472-16382398 protein_coding
  ENST00000527619 SOX6-003 15972708-16402846 protein_coding
  ENST00000527840 SOX6-007 15986265-16015327 processed_transcript
  ENST00000528252 SOX6-002 15972699-16408884 protein_coding
  ENST00000528429 SOX6-012 15972708-16402863 protein_coding
  ENST00000529469 SOX6-008 16341011-16434450 protein_coding
  ENST00000530378 SOX6-011 16264449-16738643 nonsense_mediated_decay
  ENST00000531297 SOX6-014 16186781-16252536 processed_transcript
  ENST00000533411 SOX6-009 16234640-16397562 protein_coding
  ENST00000533658 SOX6-006 16318026-16605991 processed_transcript
  ENST00000533870 SOX6-005 16311245-16341269 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZR CIL_0003ZR_0001 CGP 11:15112424-16739591
CIL_0007MN CIL_0007MN_0001 UCNEbase 11:15367929-16420508
CIL_0007RU CIL_0007RU_0001 VISTA 11:15810326-16413523
CIL_0008U3 CIL_0008U3_0001 VISTA 11:15869319-16470907

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000902 IEA cell morphogenesis
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001701 IEA in utero embryonic development
GO:0003677 NAS DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007517 NAS muscle organ development
GO:0009791 IEA post-embryonic development
GO:0010468 IEA regulation of gene expression
GO:0016458 IEA gene silencing
GO:0021778 IEA oligodendrocyte cell fate specification
GO:0030097 IEA hemopoiesis
GO:0030218 IEA erythrocyte differentiation
GO:0032332 IDA positive regulation of chondrocyte differentiation
GO:0042692 IEA muscle cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045165 IEA cell fate commitment
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048708 IEA astrocyte differentiation
GO:0048709 IEA oligodendrocyte differentiation
GO:0048821 IEA erythrocyte development
GO:0051216 IEA cartilage development
GO:0055007 IEA cardiac muscle cell differentiation
GO:0061036 IDA positive regulation of cartilage development
GO:0071560 IDA cellular response to transforming growth factor beta stimulus
GO:2000741 IDA positive regulation of mesenchymal stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015536 sox6 SRY-box containing gene 6 protein_coding Danio_rerio
ENSMUSG00000051910 Sox6 SRY (sex determining region Y)-box 6 protein_coding Mus_musculus

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