C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | SRY (sex determining region Y)-box 6 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000530378  |
SOX6-011 |
ENSG00000110693 |
9606 | - |
11:16264449-16738643  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0003ZR | CIL_0003ZR_0001 | CGP | 11:15112424-16739591 |
| CIL_0007MN | CIL_0007MN_0001 | UCNEbase | 11:15367929-16420508 |
| CIL_0007RU | CIL_0007RU_0001 | VISTA | 11:15810326-16413523 |
| CIL_0008U3 | CIL_0008U3_0001 | VISTA | 11:15869319-16470907 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000981 | IEA | sequence-specific DNA binding RNA polymerase II transcription factor activity |
| GO:0005634 | IEA | nucleus |
| GO:0006357 | IEA | regulation of transcription from RNA polymerase II promoter |
| GO:0006366 | IEA | transcription from RNA polymerase II promoter |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000166877
|
Sox6-204 | protein_coding | Mus_musculus | 0 | 876 |
|
ENSMUST00000072804
|
Sox6-201 | protein_coding | Mus_musculus | 0 | 750 |
|
ENSMUST00000106612
|
Sox6-202 | protein_coding | Mus_musculus | 0 | 750 |
|
ENSMUST00000169129
|
Sox6-205 | protein_coding | Mus_musculus | 0 | 699 |
|
ENSMUST00000166207
|
Sox6-203 | protein_coding | Mus_musculus | 0 | 697 |
|
ENSDART00000100998
|
sox6-201 | protein_coding | Danio_rerio | 6.99949e-42 | 176 |
|
ENSDART00000150068
|
sox6-001 | protein_coding | Danio_rerio | 6.99949e-42 | 176 |
