C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: SRY (sex determining region Y)-box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530378 SOX6-011 ENSG00000110693 9606 - 11:16264449-16738643 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZR CIL_0003ZR_0001 CGP 11:15112424-16739591
CIL_0007MN CIL_0007MN_0001 UCNEbase 11:15367929-16420508
CIL_0007RU CIL_0007RU_0001 VISTA 11:15810326-16413523
CIL_0008U3 CIL_0008U3_0001 VISTA 11:15869319-16470907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005634 IEA nucleus
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166877 Sox6-204 protein_coding Mus_musculus 0 876
ENSMUST00000072804 Sox6-201 protein_coding Mus_musculus 0 750
ENSMUST00000106612 Sox6-202 protein_coding Mus_musculus 0 750
ENSMUST00000169129 Sox6-205 protein_coding Mus_musculus 0 699
ENSMUST00000166207 Sox6-203 protein_coding Mus_musculus 0 697
ENSDART00000100998 sox6-201 protein_coding Danio_rerio 6.99949e-42 176
ENSDART00000150068 sox6-001 protein_coding Danio_rerio 6.99949e-42 176

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