C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528252 SOX6-002 ENSG00000110693 9606 - 11:15972699-16408884 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003ZR CIL_0003ZR_0001 CGP 11:15112424-16739591
CIL_0007MN CIL_0007MN_0001 UCNEbase 11:15367929-16420508
CIL_0007RU CIL_0007RU_0001 VISTA 11:15810326-16413523
CIL_0008U3 CIL_0008U3_0001 VISTA 11:15869319-16470907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 NAS DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA:IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007517 NAS muscle organ development
GO:0032332 IDA positive regulation of chondrocyte differentiation
GO:0061036 IDA positive regulation of cartilage development
GO:0071560 IDA cellular response to transforming growth factor beta stimulus
GO:2000741 IDA positive regulation of mesenchymal stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169129 Sox6-205 protein_coding Mus_musculus 0 2050
ENSMUST00000166877 Sox6-204 protein_coding Mus_musculus 0 2050
ENSMUST00000106612 Sox6-202 protein_coding Mus_musculus 0 2045
ENSMUST00000166207 Sox6-203 protein_coding Mus_musculus 0 1543
ENSMUST00000072804 Sox6-201 protein_coding Mus_musculus 0 1537
ENSDART00000100998 sox6-201 protein_coding Danio_rerio 0 787
ENSDART00000150068 sox6-001 protein_coding Danio_rerio 0 787
ENSDART00000150225 sox6-002 retained_intron Danio_rerio 0 351
ENSDART00000006737 sox5-201 protein_coding Danio_rerio 0 272
ENSDART00000134595 sox5-001 protein_coding Danio_rerio 0 272

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