C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 29 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360579 VPS29-002 ENSG00000111237 9606 - 12:110491523-110502099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000360579
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000360579 5.224±0.00 5.916±0.00 10.811±0.00 10.516±0.00 4.778±0.00 17.177±6.64 3.279±0.00 7.233±3.57 10.331±2.77 10.232±0.20 8.340±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004647 IEA phosphoserine phosphatase activity
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005829 TAS cytosol
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016311 IEA dephosphorylation
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118830 Vps29-002 protein_coding Mus_musculus 0 965
ENSMUST00000155671 Vps29-001 protein_coding Mus_musculus 0 915
ENSMUST00000111729 Vps29-003 nonsense_mediated_decay Mus_musculus 0 813
ENSMUST00000117868 Vps29-007 protein_coding Mus_musculus 0 580
ENSMUST00000154686 Vps29-005 nonsense_mediated_decay Mus_musculus 0 569
ENSMUST00000132785 Vps29-006 processed_transcript Mus_musculus 0 518
ENSMUST00000145821 Vps29-004 protein_coding Mus_musculus 0 429

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