C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: choline phosphotransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111666 CHPT1 9606 + 12:101696947-101744140 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229266 CHPT1-001 101697627-101729074 protein_coding
  ENST00000546490 CHPT1-007 101697854-101714284 retained_intron
  ENST00000546873 CHPT1-009 101726323-101744140 nonsense_mediated_decay
  ENST00000549128 CHPT1-004 101697692-101729016 nonsense_mediated_decay
  ENST00000549872 CHPT1-002 101697672-101727039 protein_coding
  ENST00000550385 CHPT1-006 101696947-101720226 processed_transcript
  ENST00000552213 CHPT1-010 101739578-101744010 processed_transcript
  ENST00000552215 CHPT1-005 101697965-101729646 nonsense_mediated_decay
  ENST00000552329 CHPT1-008 101714528-101723254 nonsense_mediated_decay
  ENST00000552351 CHPT1-003 101697692-101729051 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229266ENST00000549128ENST00000549872ENST00000552215ENST00000552329ENST00000552351
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229266 35.265±0.00 6.544±0.00 4.340±0.00 6.187±1.92 7.487±0.00 6.967±3.13 22.125±14.88 21.273±4.08 15.169±9.41 10.023±5.51 N/A 15.340±3.01 15.288±3.08 17.220±0.00
ENST00000549128 15.363±0.00 11.424±0.00 N/A 13.230±0.00 12.500±0.00 26.497±0.00 24.889±0.00 N/A 12.713±9.28 13.006±10.88 4.288±1.10 6.958±0.12 3.016±0.00 43.960±6.78
ENST00000549872 N/A N/A N/A 1.927±0.00 3.162±0.00 4.012±0.56 1.869±0.00 4.706±0.00 N/A 2.123±0.00 N/A 2.945±0.00 2.812±1.26 N/A
ENST00000552215 N/A 1.158±0.00 1.395±0.00 0.981±0.00 N/A 1.294±0.00 0.784±0.00 1.983±0.00 0.993±0.00 1.222±0.00 N/A 0.478±0.00 N/A N/A
ENST00000552329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.177±0.00 N/A N/A
ENST00000552351 N/A 6.537±0.00 N/A 4.206±0.00 13.400±0.00 N/A N/A N/A N/A N/A 6.125±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001558 NAS regulation of cell growth
GO:0004142 IDA diacylglycerol cholinephosphotransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006629 TAS lipid metabolic process
GO:0006644 TAS phospholipid metabolic process
GO:0006656 IDA phosphatidylcholine biosynthetic process
GO:0006657 NAS CDP-choline pathway
GO:0006663 IDA platelet activating factor biosynthetic process
GO:0008654 IEA phospholipid biosynthetic process
GO:0016020 NAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups
GO:0019992 NAS diacylglycerol binding
GO:0043231 NAS intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014572 chpt1 choline phosphotransferase 1 protein_coding Danio_rerio
ENSMUSG00000060002 Chpt1 choline phosphotransferase 1 protein_coding Mus_musculus

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