C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549128 CHPT1-004 ENSG00000111666 9606 + 12:101697692-101729016 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000549128
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000549128 15.363±0.00 11.424±0.00 13.230±0.00 12.500±0.00 26.497±0.00 24.889±0.00 12.713±9.28 13.006±10.88 4.288±1.10 6.958±0.12 3.016±0.00 43.960±6.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008654 IEA phospholipid biosynthetic process
GO:0016020 IEA membrane
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000139109 Chpt1-003 nonsense_mediated_decay Mus_musculus 0 1746
ENSMUST00000020253 Chpt1-001 protein_coding Mus_musculus 0 1633
ENSMUST00000117440 Chpt1-004 protein_coding Mus_musculus 0 1513
ENSMUST00000143108 Chpt1-002 nonsense_mediated_decay Mus_musculus 0 852
ENSMUST00000126074 Chpt1-005 nonsense_mediated_decay Mus_musculus 0 784
ENSMUST00000117579 Chpt1-007 protein_coding Mus_musculus 0 686
ENSMUST00000073783 Chpt1-006 protein_coding Mus_musculus 0 686
ENSMUST00000134318 Chpt1-008 protein_coding Mus_musculus 0 632
ENSMUST00000122228 Gm13131-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000148899 Chpt1-009 protein_coding Mus_musculus 0 287
ENSMUST00000125612 Sycp3-003 protein_coding Mus_musculus 7e-36 156
ENSMUST00000123244 Sycp3-002 nonsense_mediated_decay Mus_musculus 5e-23 113
ENSMUST00000020252 Sycp3-001 protein_coding Mus_musculus 5e-23 113

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