C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000552215 CHPT1-005 ENSG00000111666 9606 + 12:101697965-101729646 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungOvaryENST00000552215
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary
ENST00000552215 1.158±0.00 1.395±0.00 0.981±0.00 1.294±0.00 0.784±0.00 1.983±0.00 0.993±0.00 1.222±0.00 0.478±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008654 IEA phospholipid biosynthetic process
GO:0016020 IEA membrane
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143108 Chpt1-002 nonsense_mediated_decay Mus_musculus 0 1592
ENSMUST00000126074 Chpt1-005 nonsense_mediated_decay Mus_musculus 0 1397
ENSMUST00000020253 Chpt1-001 protein_coding Mus_musculus 0 928
ENSMUST00000139109 Chpt1-003 nonsense_mediated_decay Mus_musculus 0 846
ENSMUST00000117440 Chpt1-004 protein_coding Mus_musculus 0 732
ENSMUST00000134318 Chpt1-008 protein_coding Mus_musculus 0 632
ENSMUST00000117579 Chpt1-007 protein_coding Mus_musculus 0 531
ENSMUST00000073783 Chpt1-006 protein_coding Mus_musculus 0 531
ENSMUST00000125612 Sycp3-003 protein_coding Mus_musculus 0 411
ENSMUST00000122228 Gm13131-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000148899 Chpt1-009 protein_coding Mus_musculus 0 287
ENSMUST00000123244 Sycp3-002 nonsense_mediated_decay Mus_musculus 1.00053e-42 180
ENSMUST00000020252 Sycp3-001 protein_coding Mus_musculus 1.00053e-42 180

Loading