C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline phosphotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549872 CHPT1-002 ENSG00000111666 9606 + 12:101697672-101727039 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungOvaryPlacentaENST00000549872
Transcript ID Brain Breast Colon Heart Kidney Lung Ovary Placenta
ENST00000549872 1.927±0.00 3.162±0.00 4.012±0.56 1.869±0.00 4.706±0.00 2.123±0.00 2.945±0.00 2.812±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S4 CIL_0002S4_0001 CGP 12:101696947-101744140

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008654 IEA phospholipid biosynthetic process
GO:0016020 IEA membrane
GO:0016780 IEA phosphotransferase activity, for other substituted phosphate groups

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020253 Chpt1-001 protein_coding Mus_musculus 0 1709
ENSMUST00000139109 Chpt1-003 nonsense_mediated_decay Mus_musculus 0 1605
ENSMUST00000117440 Chpt1-004 protein_coding Mus_musculus 0 1513
ENSMUST00000143108 Chpt1-002 nonsense_mediated_decay Mus_musculus 0 928
ENSMUST00000126074 Chpt1-005 nonsense_mediated_decay Mus_musculus 0 784
ENSMUST00000117579 Chpt1-007 protein_coding Mus_musculus 0 686
ENSMUST00000073783 Chpt1-006 protein_coding Mus_musculus 0 686
ENSMUST00000134318 Chpt1-008 protein_coding Mus_musculus 0 632
ENSMUST00000122228 Gm13131-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000148899 Chpt1-009 protein_coding Mus_musculus 0 287

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