C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: choline phosphotransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000060002 Chpt1 10090 - 10:88452745-88504073 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020253 Chpt1-001 88472817-88503970 protein_coding
  ENSMUST00000073783 Chpt1-006 88487042-88503925 protein_coding
  ENSMUST00000117440 Chpt1-004 88469514-88504073 protein_coding
  ENSMUST00000117579 Chpt1-007 88485593-88503918 protein_coding
  ENSMUST00000126074 Chpt1-005 88472419-88503999 nonsense_mediated_decay
  ENSMUST00000134318 Chpt1-008 88453004-88480872 protein_coding
  ENSMUST00000139109 Chpt1-003 88472839-88503889 nonsense_mediated_decay
  ENSMUST00000143108 Chpt1-002 88472817-88503753 nonsense_mediated_decay
  ENSMUST00000148899 Chpt1-009 88452745-88476440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020253ENSMUST00000073783ENSMUST00000117440ENSMUST00000139109ENSMUST00000143108
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020253 N/A N/A 6.108±1.30 0.312±0.00 8.125±0.00 N/A 9.204±1.23 27.975±0.74 0.394±0.07 N/A 8.315±0.89 11.185±4.94 2.799±1.07 N/A
ENSMUST00000073783 214.628±124.82 275.700±152.19 N/A N/A 203.537±50.90 42.904±6.62 64.065±27.68 190.713±45.09 23.040±10.48 40.404±13.28 N/A 51.136±8.27 N/A 18.878±3.59
ENSMUST00000117440 N/A N/A 3.937±0.86 1.337±1.42 N/A N/A 3.756±0.00 N/A 0.160±0.03 N/A 5.144±0.41 4.782±0.76 1.058±0.29 N/A
ENSMUST00000139109 178.228±94.31 123.134±44.96 12.311±0.18 1.251±0.29 78.077±4.55 7.327±1.37 50.156±4.91 105.607±16.80 13.247±14.93 24.638±5.06 28.918±1.35 16.195±10.47 15.897±10.36 31.283±6.65
ENSMUST00000143108 N/A N/A N/A 0.609±0.16 N/A N/A N/A N/A 1.750±1.46 N/A N/A 2.532±0.00 4.614±0.91 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078K CIL_00078K_0002 CGP 10:88379132-88504073
CIL_0002S4 CIL_0002S4_0002 CGP 10:88452745-88504073

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004142 ISS diacylglycerol cholinephosphotransferase activity
GO:0005794 IDA Golgi apparatus
GO:0006656 ISS phosphatidylcholine biosynthetic process
GO:0006657 IEA CDP-choline pathway
GO:0006663 ISS platelet activating factor biosynthetic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016780 IDA phosphotransferase activity, for other substituted phosphate groups
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014572 chpt1 choline phosphotransferase 1 protein_coding Danio_rerio
ENSG00000111666 CHPT1 choline phosphotransferase 1 protein_coding Homo_sapiens

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