C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S15
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115268 RPS15 9606 + 19:1438358-1440494 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233609 RPS15-006 1438358-1440494 protein_coding
  ENST00000585665 RPS15-010 1438422-1440494 protein_coding
  ENST00000586096 RPS15-011 1438421-1440494 protein_coding
  ENST00000586656 RPS15-005 1438405-1440233 protein_coding
  ENST00000586686 RPS15-009 1438385-1440494 protein_coding
  ENST00000589656 RPS15-004 1438405-1440488 protein_coding
  ENST00000591032 RPS15-008 1438400-1440490 protein_coding
  ENST00000591804 RPS15-013 1438406-1440494 protein_coding
  ENST00000592588 RPS15-001 1438386-1440494 protein_coding
  ENST00000592623 RPS15-012 1438401-1440494 protein_coding
  ENST00000592700 RPS15-003 1438420-1440494 retained_intron
  ENST00000593052 RPS15-002 1438419-1440494 protein_coding
  ENST00000617694 RPS15-007 1438422-1440049 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233609ENST00000585665ENST00000589656ENST00000592588ENST00000592623
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233609 N/A N/A 2.871±0.00 20.157±1.72 37.833±0.00 74.317±0.00 2.546±0.00 N/A 9.241±0.00 N/A N/A 141.394±120.96 168.407±22.25 32.994±16.98
ENST00000585665 107.725±0.00 150.563±0.00 N/A 71.626±0.00 92.907±0.00 232.863±0.00 92.027±0.00 165.012±0.00 63.798±0.00 352.545±0.00 313.919±0.00 N/A N/A 99.449±0.00
ENST00000589656 N/A N/A N/A 92.014±0.00 116.218±0.00 280.809±0.00 N/A 145.538±0.00 N/A N/A N/A 42.079±0.00 97.714±0.00 129.650±0.00
ENST00000592588 289.138±0.00 463.538±0.00 11.938±0.00 117.915±0.00 92.571±22.50 66.186±0.00 43.903±27.30 71.136±0.00 70.968±34.12 228.480±192.79 205.335±52.12 385.276±411.43 641.171±392.58 81.273±8.35
ENST00000592623 N/A N/A 1.117±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZD CIL_0005ZD_0002 CGP 19:1407569-1440494
CIL_0000ZF CIL_0000ZF_0001 CGP 19:1438358-1473244

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000056 IMP ribosomal small subunit export from nucleus
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001649 IDA osteoblast differentiation
GO:0003677 NAS DNA binding
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005654 NAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070849 rps15 ribosomal protein S15 protein_coding Danio_rerio
ENSMUSG00000063457 Rps15 ribosomal protein S15 protein_coding Mus_musculus

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