C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233609 RPS15-006 ENSG00000115268 9606 + 19:1438358-1440494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverOvaryPlacentaTestisENST00000233609
Transcript ID Bladder Brain Breast Colon Heart Liver Ovary Placenta Testis
ENST00000233609 2.871±0.00 20.157±1.72 37.833±0.00 74.317±0.00 2.546±0.00 9.241±0.00 141.394±120.96 168.407±22.25 32.994±16.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZD CIL_0005ZD_0002 CGP 19:1407569-1440494
CIL_0000ZF CIL_0000ZF_0001 CGP 19:1438358-1473244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062674 Rps15-002 protein_coding Mus_musculus 0 569
ENSMUST00000068408 Rps15-001 protein_coding Mus_musculus 0 569
ENSMUST00000121788 Rps15-ps2-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000161478 Gm6921-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000118102 Gm8692-001 processed_pseudogene Mus_musculus 0 448
ENSDART00000104364 rps15-001 protein_coding Danio_rerio 0 438
ENSMUST00000116114 Gm12947-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000169588 Gm4775-201 protein_coding Mus_musculus 0 320

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