C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585665 RPS15-010 ENSG00000115268 9606 + 19:1438422-1440494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000585665
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000585665 107.725±0.00 150.563±0.00 71.626±0.00 92.907±0.00 232.863±0.00 92.027±0.00 165.012±0.00 63.798±0.00 352.545±0.00 313.919±0.00 99.449±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZD CIL_0005ZD_0002 CGP 19:1407569-1440494
CIL_0000ZF CIL_0000ZF_0001 CGP 19:1438358-1473244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068408 Rps15-001 protein_coding Mus_musculus 0 547
ENSMUST00000062674 Rps15-002 protein_coding Mus_musculus 0 536
ENSMUST00000121788 Rps15-ps2-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000161478 Gm6921-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000118102 Gm8692-001 processed_pseudogene Mus_musculus 0 412
ENSDART00000104364 rps15-001 protein_coding Danio_rerio 0 403
ENSMUST00000116114 Gm12947-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000169588 Gm4775-201 protein_coding Mus_musculus 0 315

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