C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592588 RPS15-001 ENSG00000115268 9606 + 19:1438386-1440494 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000592588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000592588 289.138±0.00 463.538±0.00 11.938±0.00 117.915±0.00 92.571±22.50 66.186±0.00 43.903±27.30 71.136±0.00 70.968±34.12 228.480±192.79 205.335±52.12 385.276±411.43 641.171±392.58 81.273±8.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZD CIL_0005ZD_0002 CGP 19:1407569-1440494
CIL_0000ZF CIL_0000ZF_0001 CGP 19:1438358-1473244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000056 IMP ribosomal small subunit export from nucleus
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001649 IDA osteoblast differentiation
GO:0003677 NAS DNA binding
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0005654 NAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006364 IMP rRNA processing
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0042274 IMP ribosomal small subunit biogenesis
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068408 Rps15-001 protein_coding Mus_musculus 0 586
ENSMUST00000062674 Rps15-002 protein_coding Mus_musculus 0 571
ENSMUST00000121788 Rps15-ps2-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000161478 Gm6921-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000118102 Gm8692-001 processed_pseudogene Mus_musculus 0 453
ENSDART00000104364 rps15-001 protein_coding Danio_rerio 0 444
ENSMUST00000116114 Gm12947-001 processed_pseudogene Mus_musculus 0 398
ENSMUST00000169588 Gm4775-201 protein_coding Mus_musculus 0 320

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