C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000589656 RPS15-004 ENSG00000115268 9606 + 19:1438405-1440488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyOvaryPlacentaTestisENST00000589656
Transcript ID Brain Breast Colon Kidney Ovary Placenta Testis
ENST00000589656 92.014±0.00 116.218±0.00 280.809±0.00 145.538±0.00 42.079±0.00 97.714±0.00 129.650±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZD CIL_0005ZD_0002 CGP 19:1407569-1440494
CIL_0000ZF CIL_0000ZF_0001 CGP 19:1438358-1473244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068408 Rps15-001 protein_coding Mus_musculus 0 520
ENSMUST00000062674 Rps15-002 protein_coding Mus_musculus 0 505
ENSMUST00000121788 Rps15-ps2-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000161478 Gm6921-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000118102 Gm8692-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000116114 Gm12947-001 processed_pseudogene Mus_musculus 0 337

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