C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high density lipoprotein binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000310931 HDLBP-003 ENSG00000115677 9606 - 2:241229212-241315842 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000310931
Transcript ID Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000310931 12.627±0.00 10.510±0.00 15.797±0.00 12.084±0.00 35.689±13.51 48.472±5.52 69.635±0.00 91.521±12.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000473 CIL_000473_0001 CGP 2:241188509-241317061
CIL_0002JH CIL_0002JH_0001 CGP 2:241227264-241354027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170883 Hdlbp-001 protein_coding Mus_musculus 0 5247
ENSMUST00000042498 Hdlbp-003 protein_coding Mus_musculus 0 5147
ENSMUST00000186164 Hdlbp-004 protein_coding Mus_musculus 0 3563
ENSMUST00000189951 Hdlbp-002 retained_intron Mus_musculus 0 1736
ENSDART00000011863 hdlbpa-001 protein_coding Danio_rerio 0 1626
ENSMUST00000188988 Hdlbp-010 protein_coding Mus_musculus 0 765
ENSMUST00000186787 Hdlbp-008 protein_coding Mus_musculus 0 697
ENSMUST00000189025 Hdlbp-006 protein_coding Mus_musculus 0 656
ENSMUST00000190321 Hdlbp-007 protein_coding Mus_musculus 0 496
ENSDART00000055771 hdlbpa-201 protein_coding Danio_rerio 0 353
ENSMUST00000185349 Hdlbp-009 retained_intron Mus_musculus 0 239
ENSMUST00000188165 Hdlbp-005 protein_coding Mus_musculus 0 224

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