C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high density lipoprotein binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427183 HDLBP-201 ENSG00000115677 9606 - 2:241227267-241272831 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000473 CIL_000473_0001 CGP 2:241188509-241317061
CIL_0002JH CIL_0002JH_0001 CGP 2:241227264-241354027

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 TAS plasma membrane
GO:0006869 IEA lipid transport
GO:0008203 IEA cholesterol metabolic process
GO:0008289 TAS lipid binding
GO:0034364 IEA high-density lipoprotein particle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186164 Hdlbp-004 protein_coding Mus_musculus 0 4787
ENSMUST00000042498 Hdlbp-003 protein_coding Mus_musculus 0 3565
ENSMUST00000170883 Hdlbp-001 protein_coding Mus_musculus 0 3565
ENSMUST00000189951 Hdlbp-002 retained_intron Mus_musculus 0 1230
ENSDART00000011863 hdlbpa-001 protein_coding Danio_rerio 0 1068
ENSMUST00000188988 Hdlbp-010 protein_coding Mus_musculus 0 765
ENSMUST00000186787 Hdlbp-008 protein_coding Mus_musculus 0 608
ENSMUST00000189025 Hdlbp-006 protein_coding Mus_musculus 0 569
ENSMUST00000190321 Hdlbp-007 protein_coding Mus_musculus 0 496
ENSDART00000055771 hdlbpa-201 protein_coding Danio_rerio 0 353
ENSMUST00000185349 Hdlbp-009 retained_intron Mus_musculus 4e-34 152
ENSMUST00000188165 Hdlbp-005 protein_coding Mus_musculus 1e-29 137

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