C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribophorin II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000118705 RPN2 9606 + 20:37178410-37241623 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000237530 RPN2-001 37179046-37241623 protein_coding
  ENST00000373622 RPN2-003 37179161-37241619 protein_coding
  ENST00000373632 RPN2-002 37179318-37210165 protein_coding
  ENST00000437329 RPN2-006 37228634-37241418 protein_coding
  ENST00000456102 RPN2-004 37178410-37210150 protein_coding
  ENST00000456400 RPN2-007 37228678-37241429 protein_coding
  ENST00000462163 RPN2-005 37179330-37207443 nonsense_mediated_decay
  ENST00000470352 RPN2-008 37229870-37241417 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000237530ENST00000373622ENST00000373632ENST00000470352
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000237530 40.257±0.00 55.267±0.00 9.452±0.00 7.919±4.95 32.884±8.66 27.048±12.88 10.501±0.00 53.143±34.46 59.360±52.65 36.519±28.40 11.679±10.32 62.496±24.97 181.700±26.24 60.948±0.00
ENST00000373622 N/A 10.076±0.00 N/A 9.779±0.00 7.992±0.00 N/A N/A N/A N/A N/A 19.714±0.00 12.299±0.00 N/A 73.585±42.17
ENST00000373632 N/A N/A N/A N/A N/A N/A N/A N/A 4.947±0.00 N/A N/A N/A N/A N/A
ENST00000470352 N/A N/A N/A N/A 40.465±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XV CIL_0004XV_0001 CGP 20:36996349-37179588
CIL_00020D CIL_00020D_0001 CGP 20:37101226-37241623
CIL_0004Y1 CIL_0004Y1_0001 CGP 20:37178410-37261835

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000421 IEA autophagic vacuole membrane
GO:0004579 NAS dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005791 IEA rough endoplasmic reticulum
GO:0006412 TAS translation
GO:0006464 TAS cellular protein modification process
GO:0006487 IEA protein N-linked glycosylation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007568 IEA aging
GO:0008250 TAS:IEA oligosaccharyltransferase complex
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0018279 NAS protein N-linked glycosylation via asparagine
GO:0042493 IEA response to drug
GO:0043022 IEA ribosome binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009724 rpn2 ribophorin II protein_coding Danio_rerio
ENSMUSG00000027642 Rpn2 ribophorin II protein_coding Mus_musculus

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