C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribophorin II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000237530 RPN2-001 ENSG00000118705 9606 + 20:37179046-37241623 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000237530
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000237530 40.257±0.00 55.267±0.00 9.452±0.00 7.919±4.95 32.884±8.66 27.048±12.88 10.501±0.00 53.143±34.46 59.360±52.65 36.519±28.40 11.679±10.32 62.496±24.97 181.700±26.24 60.948±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XV CIL_0004XV_0001 CGP 20:36996349-37179588
CIL_00020D CIL_00020D_0001 CGP 20:37101226-37241623
CIL_0004Y1 CIL_0004Y1_0001 CGP 20:37178410-37261835

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000421 IEA autophagic vacuole membrane
GO:0004579 NAS dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005634 IDA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005791 IEA rough endoplasmic reticulum
GO:0006412 TAS translation
GO:0006464 TAS cellular protein modification process
GO:0006487 IEA protein N-linked glycosylation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0007568 IEA aging
GO:0008250 TAS:IEA oligosaccharyltransferase complex
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0018279 NAS protein N-linked glycosylation via asparagine
GO:0042493 IEA response to drug
GO:0043022 IEA ribosome binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116380 Rpn2-001 protein_coding Mus_musculus 0 2414
ENSMUST00000127252 Rpn2-003 processed_transcript Mus_musculus 0 2281
ENSMUST00000126248 Rpn2-004 processed_transcript Mus_musculus 0 2237
ENSMUST00000029171 Rpn2-002 protein_coding Mus_musculus 0 1908
ENSMUST00000150349 Rpn2-005 processed_transcript Mus_musculus 0 508
ENSMUST00000141934 Rpn2-011 retained_intron Mus_musculus 0 453
ENSMUST00000156007 Rpn2-007 processed_transcript Mus_musculus 0 390
ENSMUST00000123639 Rpn2-008 processed_transcript Mus_musculus 0 383
ENSMUST00000149924 Rpn2-010 retained_intron Mus_musculus 0 285
ENSMUST00000142463 Rpn2-006 processed_transcript Mus_musculus 0 257
ENSMUST00000150035 Mroh8-002 processed_transcript Mus_musculus 1e-30 139
ENSMUST00000143663 Mroh8-001 protein_coding Mus_musculus 1e-30 139

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