C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribophorin II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027642 Rpn2 10090 + 2:157279017-157326319 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029171 Rpn2-002 157279146-157326319 protein_coding
  ENSMUST00000116380 Rpn2-001 157279059-157326319 protein_coding
  ENSMUST00000123639 Rpn2-008 157314551-157316208 processed_transcript
  ENSMUST00000125311 Rpn2-009 157294842-157295353 processed_transcript
  ENSMUST00000126248 Rpn2-004 157283583-157325735 processed_transcript
  ENSMUST00000127252 Rpn2-003 157279426-157326056 processed_transcript
  ENSMUST00000141934 Rpn2-011 157316177-157322471 retained_intron
  ENSMUST00000142463 Rpn2-006 157279017-157289561 processed_transcript
  ENSMUST00000149924 Rpn2-010 157319783-157322160 retained_intron
  ENSMUST00000150349 Rpn2-005 157279569-157290711 processed_transcript
  ENSMUST00000156007 Rpn2-007 157281943-157290592 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029171ENSMUST00000116380ENSMUST00000126248ENSMUST00000127252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029171 N/A N/A N/A 11.510±0.00 N/A N/A N/A N/A N/A N/A 5.582±1.22 N/A N/A 38.075±0.00
ENSMUST00000116380 29.730±8.43 64.956±16.97 18.752±2.97 28.372±2.00 42.615±8.33 60.850±12.91 N/A 26.628±11.55 34.542±10.97 39.647±9.31 N/A 54.448±18.21 56.541±18.26 40.820±0.00
ENSMUST00000126248 67.129±10.85 52.886±16.20 N/A 28.432±5.25 44.043±2.90 46.360±16.86 16.157±1.91 31.706±16.25 36.233±12.48 58.134±4.45 6.096±0.87 74.406±9.36 N/A 66.581±22.17
ENSMUST00000127252 21.652±6.92 N/A 53.896±0.78 N/A 37.562±18.85 N/A 10.208±1.45 35.927±8.60 45.018±8.06 15.050±0.48 8.471±0.93 121.935±5.50 196.701±76.21 33.543±5.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XV CIL_0004XV_0002 CGP 2:157145893-157279549
CIL_00020D CIL_00020D_0002 CGP 2:157208550-157326319
CIL_0004Y1 CIL_0004Y1_0002 CGP 2:157279017-157347506

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000421 IEA autophagic vacuole membrane
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005791 IEA rough endoplasmic reticulum
GO:0006487 IMP protein N-linked glycosylation
GO:0007568 IEA aging
GO:0008250 IEA oligosaccharyltransferase complex
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0042493 IEA response to drug
GO:0043022 IEA ribosome binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009724 rpn2 ribophorin II protein_coding Danio_rerio
ENSG00000118705 RPN2 ribophorin II protein_coding Homo_sapiens

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