C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET nuclear proto-oncogene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119335 SET 9606 + 9:128683424-128696400 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322030 SET-002 128689226-128696388 protein_coding
  ENST00000372686 SET-010 128689989-128694894 protein_coding
  ENST00000372688 SET-201 128689987-128694664 protein_coding
  ENST00000372692 SET-001 128683655-128696400 protein_coding
  ENST00000409104 SET-003 128685083-128694734 protein_coding
  ENST00000454747 SET-009 128683424-128683991 protein_coding
  ENST00000466009 SET-005 128690250-128691918 processed_transcript
  ENST00000477806 SET-008 128690281-128693998 processed_transcript
  ENST00000480217 SET-004 128690285-128692916 processed_transcript
  ENST00000480536 SET-012 128691078-128692756 retained_intron
  ENST00000485056 SET-011 128692351-128692935 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322030ENST00000372686ENST00000372688ENST00000372692
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322030 64.501±0.00 71.225±0.00 14.332±0.00 36.094±8.38 32.599±11.67 52.535±32.53 24.100±10.98 33.650±19.34 29.912±6.38 37.839±21.68 35.516±28.97 83.492±49.30 63.873±40.40 61.917±4.20
ENST00000372686 N/A N/A N/A 20.296±0.00 N/A N/A 7.665±0.00 10.913±0.00 N/A N/A N/A N/A N/A N/A
ENST00000372688 N/A N/A N/A 42.008±0.00 35.764±0.00 13.353±0.00 N/A N/A 26.424±0.00 22.712±0.00 N/A 94.676±0.00 86.929±0.00 48.302±0.00
ENST00000372692 N/A N/A N/A N/A 5.791±0.00 5.057±0.00 N/A N/A N/A 6.670±0.00 N/A 13.520±5.61 11.000±1.11 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LV CIL_0002LV_0002 CGP 9:128633661-128696400
CIL_0007EE CIL_0007EE_0001 CGP 9:128683424-128720918

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0004864 TAS protein phosphatase inhibitor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0006260 TAS DNA replication
GO:0006334 IEA nucleosome assembly
GO:0006337 TAS nucleosome disassembly
GO:0006913 NAS nucleocytoplasmic transport
GO:0008601 TAS protein phosphatase type 2A regulator activity
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035067 TAS negative regulation of histone acetylation
GO:0042393 TAS histone binding
GO:0043086 TAS negative regulation of catalytic activity
GO:0043234 IDA protein complex
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050790 TAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003920 setb SET translocation (myeloid leukemia-associated) B protein_coding Danio_rerio
ENSDARG00000031495 seta SET translocation (myeloid leukemia-associated) A protein_coding Danio_rerio
ENSMUSG00000054766 Set SET nuclear oncogene protein_coding Mus_musculus

Loading