C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET nuclear proto-oncogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372692 SET-001 ENSG00000119335 9606 + 9:128683655-128696400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLungOvaryPlacentaENST00000372692
Transcript ID Breast Colon Lung Ovary Placenta
ENST00000372692 5.791±0.00 5.057±0.00 6.670±0.00 13.520±5.61 11.000±1.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LV CIL_0002LV_0002 CGP 9:128633661-128696400
CIL_0007EE CIL_0007EE_0001 CGP 9:128683424-128720918

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0003677 IEA DNA binding
GO:0004864 TAS protein phosphatase inhibitor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0006260 TAS DNA replication
GO:0006334 IEA nucleosome assembly
GO:0006337 TAS nucleosome disassembly
GO:0006913 NAS nucleocytoplasmic transport
GO:0008601 TAS protein phosphatase type 2A regulator activity
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035067 TAS negative regulation of histone acetylation
GO:0042393 TAS histone binding
GO:0043086 TAS negative regulation of catalytic activity
GO:0043234 IDA protein complex
GO:0043524 IGI negative regulation of neuron apoptotic process
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048471 IDA perinuclear region of cytoplasm
GO:0050790 TAS regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102866 Set-001 protein_coding Mus_musculus 0 2060
ENSMUST00000067996 Set-002 protein_coding Mus_musculus 0 1971
ENSMUST00000125824 Set-005 processed_transcript Mus_musculus 0 1190
ENSMUST00000183511 Gm9531-001 transcribed_processed_pseudogene Mus_musculus 0 1053
ENSMUST00000121098 Gm12642-001 processed_pseudogene Mus_musculus 0 985
ENSMUST00000118921 Gm11877-001 processed_pseudogene Mus_musculus 0 972
ENSMUST00000134364 Set-004 protein_coding Mus_musculus 0 911
ENSMUST00000147590 Set-007 processed_transcript Mus_musculus 0 771
ENSMUST00000120309 Gm14746-001 processed_pseudogene Mus_musculus 0 749
ENSMUST00000137291 Set-006 processed_transcript Mus_musculus 0 704
ENSMUST00000190284 RP24-492P7.1-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000120258 Gm16420-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000149578 Set-003 protein_coding Mus_musculus 0 627
ENSMUST00000121657 Gm12752-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000184573 Gm9531-006 retained_intron Mus_musculus 0 287
ENSMUST00000055820 Gm9531-002 processed_transcript Mus_musculus 0 285

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