C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET nuclear oncogene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054766 Set 10090 + 2:30057378-30072577 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067996 Set-002 30066456-30072577 protein_coding
  ENSMUST00000102866 Set-001 30061853-30072577 protein_coding
  ENSMUST00000125824 Set-005 30062601-30071118 processed_transcript
  ENSMUST00000134364 Set-004 30057378-30070303 protein_coding
  ENSMUST00000137291 Set-006 30067193-30069630 processed_transcript
  ENSMUST00000147590 Set-007 30070170-30071429 processed_transcript
  ENSMUST00000149578 Set-003 30061754-30069557 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067996ENSMUST00000102866ENSMUST00000125824ENSMUST00000134364ENSMUST00000147590ENSMUST00000149578
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067996 23.118±13.10 17.712±4.39 34.651±1.44 54.742±24.91 22.022±16.12 30.532±5.93 13.830±0.46 22.962±2.52 36.112±24.50 32.641±5.20 18.780±0.71 66.203±30.48 35.234±19.96 13.596±4.95
ENSMUST00000102866 7.013±1.41 21.262±4.18 N/A N/A 10.778±3.69 N/A N/A 2.643±0.25 7.883±7.07 N/A N/A 15.307±0.00 N/A N/A
ENSMUST00000125824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 70.281±0.00
ENSMUST00000134364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 78.503±59.75 N/A
ENSMUST00000147590 N/A N/A 28.078±1.92 66.654±0.00 N/A N/A N/A N/A 80.816±40.96 N/A N/A 30.711±0.76 60.844±31.49 11.672±0.52
ENSMUST00000149578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 160.634±0.00 567.501±431.51 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LV CIL_0002LV_0003 CGP 2:30031546-30072577
CIL_0007EE CIL_0007EE_0002 CGP 2:30057378-30091022

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0006334 IEA nucleosome assembly
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003920 setb SET translocation (myeloid leukemia-associated) B protein_coding Danio_rerio
ENSDARG00000031495 seta SET translocation (myeloid leukemia-associated) A protein_coding Danio_rerio
ENSG00000119335 SET SET nuclear proto-oncogene protein_coding Homo_sapiens
ENSG00000230667 SETSIP SET-like protein protein_coding Homo_sapiens

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