C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000535501 CCDC53-004 ENSG00000120860 9606 - 12:102012944-102062034 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMusclePlacentaENST00000535501
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Placenta
ENST00000535501 2.440±0.00 4.553±0.00 2.442±0.00 3.456±0.00 4.637±0.00 1.791±0.00 2.689±0.85 0.870±0.00 2.774±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0071203 IEA WASH complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182183 Ccdc53-007 protein_coding Mus_musculus 0 460
ENSMUST00000020248 Ccdc53-001 protein_coding Mus_musculus 0 457
ENSMUST00000182619 Ccdc53-008 protein_coding Mus_musculus 0 320
ENSMUST00000171151 Ccdc53-002 protein_coding Mus_musculus 0 316
ENSMUST00000182359 Ccdc53-005 processed_transcript Mus_musculus 0 287
ENSMUST00000182299 Ccdc53-004 nonsense_mediated_decay Mus_musculus 0 261
ENSMUST00000182351 Ccdc53-003 retained_intron Mus_musculus 9e-33 145

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