C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240079 CCDC53-001 ENSG00000120860 9606 - 12:102012939-102062124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000240079
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000240079 5.019±0.00 3.659±0.00 3.971±0.00 11.622±0.36 6.905±1.74 8.275±4.60 4.969±1.12 9.165±6.28 5.766±0.77 5.640±1.16 5.857±2.13 9.848±5.46 9.372±2.70 43.697±24.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008150 ND biological_process
GO:0015629 IDA actin cytoskeleton
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0071203 IEA:IDA WASH complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020248 Ccdc53-001 protein_coding Mus_musculus 0 723
ENSMUST00000182183 Ccdc53-007 protein_coding Mus_musculus 0 713
ENSMUST00000171151 Ccdc53-002 protein_coding Mus_musculus 0 582
ENSMUST00000182619 Ccdc53-008 protein_coding Mus_musculus 0 507
ENSMUST00000182359 Ccdc53-005 processed_transcript Mus_musculus 0 296
ENSMUST00000182299 Ccdc53-004 nonsense_mediated_decay Mus_musculus 0 261
ENSMUST00000182351 Ccdc53-003 retained_intron Mus_musculus 0 237

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