C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000545679 CCDC53-002 ENSG00000120860 9606 - 12:102012942-102062079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000545679
Transcript ID Bladder Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000545679 1.577±0.00 4.344±0.00 2.759±0.00 2.779±0.00 2.128±0.42 2.141±0.00 3.501±1.47 2.970±0.00 11.219±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0015629 IDA actin cytoskeleton
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0071203 IEA WASH complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182183 Ccdc53-007 protein_coding Mus_musculus 0 717
ENSMUST00000020248 Ccdc53-001 protein_coding Mus_musculus 0 713
ENSMUST00000171151 Ccdc53-002 protein_coding Mus_musculus 0 573
ENSMUST00000182619 Ccdc53-008 protein_coding Mus_musculus 0 510
ENSMUST00000182359 Ccdc53-005 processed_transcript Mus_musculus 0 287
ENSMUST00000182299 Ccdc53-004 nonsense_mediated_decay Mus_musculus 0 261
ENSMUST00000182351 Ccdc53-003 retained_intron Mus_musculus 0 237

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