C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paraspeckle component 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000492741 PSPC1-005 ENSG00000121390 9606 - 13:19675388-19782942 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000492741
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000492741 5.122±1.05 4.986±1.37 1.887±0.00 1.383±0.43 3.392±1.08 2.818±1.10 5.020±0.28 1.814±0.00 7.569±4.50 5.995±2.30 12.395±6.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000433 CIL_000433_0001 CGP 13:19633681-19783019
CIL_000432 CIL_000432_0001 CGP 13:19674752-19863636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 ISS core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0042752 ISS regulation of circadian rhythm
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163924 Pspc1-002 protein_coding Mus_musculus 0 1578
ENSMUST00000022507 Pspc1-001 protein_coding Mus_musculus 0 1578
ENSMUST00000168575 Pspc1-003 nonsense_mediated_decay Mus_musculus 0 665
ENSMUST00000168524 Pspc1-004 retained_intron Mus_musculus 0 292

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