C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: paraspeckle component 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427943 PSPC1-004 ENSG00000121390 9606 - 13:19759347-19783002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000427943
Transcript ID Muscle
ENST00000427943 3.514±2.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000433 CIL_000433_0001 CGP 13:19633681-19783019
CIL_000432 CIL_000432_0001 CGP 13:19674752-19863636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163924 Pspc1-002 protein_coding Mus_musculus 0 990
ENSMUST00000022507 Pspc1-001 protein_coding Mus_musculus 0 990
ENSMUST00000168575 Pspc1-003 nonsense_mediated_decay Mus_musculus 2e-20 104

Loading