C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paraspeckle component 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471658 PSPC1-001 ENSG00000121390 9606 - 13:19674756-19782917 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000471658
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000471658 2.334±0.00 2.468±0.00 5.126±0.00 2.440±0.00 2.708±0.00 3.144±0.00 1.812±0.00 2.580±0.00 4.539±0.00 2.779±0.76 4.055±1.58 9.717±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000433 CIL_000433_0001 CGP 13:19633681-19783019
CIL_000432 CIL_000432_0001 CGP 13:19674752-19863636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001047 ISS core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0042752 ISS regulation of circadian rhythm
GO:0044822 IDA poly(A) RNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0048511 IEA rhythmic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163924 Pspc1-002 protein_coding Mus_musculus 0 1578
ENSMUST00000022507 Pspc1-001 protein_coding Mus_musculus 0 1578
ENSMUST00000168575 Pspc1-003 nonsense_mediated_decay Mus_musculus 0 665
ENSMUST00000168524 Pspc1-004 retained_intron Mus_musculus 0 292

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