C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 24
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000122779 TRIM24 9606 + 7:138460334-138589993 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343526 TRIM24-001 138460334-138589993 protein_coding
  ENST00000415680 TRIM24-007 138460435-138585585 protein_coding
  ENST00000464210 TRIM24-010 138514400-138525314 processed_transcript
  ENST00000485318 TRIM24-011 138514400-138515305 processed_transcript
  ENST00000493595 TRIM24-012 138554770-138573642 processed_transcript
  ENST00000497516 TRIM24-014 138461065-138570868 processed_transcript
  ENST00000620194 TRIM24-201 138460549-138584951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343526ENST00000415680ENST00000464210ENST00000497516ENST00000620194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343526 0.850±0.00 N/A N/A 0.430±0.00 0.317±0.00 0.437±0.20 0.335±0.10 N/A 0.571±0.01 0.184±0.00 N/A 2.307±0.93 0.357±0.09 0.975±0.00
ENST00000415680 5.056±0.00 4.254±0.00 0.697±0.00 2.438±1.42 2.371±1.17 1.950±0.72 1.882±1.33 3.592±1.79 2.241±1.81 1.831±0.57 8.381±0.00 8.433±5.17 3.865±1.46 14.383±2.06
ENST00000464210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.767±0.00
ENST00000497516 N/A N/A 1.708±0.00 1.177±0.00 N/A 1.670±0.00 0.845±0.00 2.639±0.00 N/A N/A 0.784±0.00 N/A N/A N/A
ENST00000620194 N/A N/A N/A 1.712±0.00 N/A 1.229±0.00 0.396±0.00 2.559±0.00 1.963±0.00 N/A 1.328±0.00 3.685±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q4 CIL_0002Q4_0001 CGP 7:138002324-138589993
CIL_0002Q3 CIL_0002Q3_0001 CGP 7:138460334-138701352

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0004672 IEA protein kinase activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005102 TAS receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0005726 IEA perichromatin fibrils
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006468 IEA protein phosphorylation
GO:0008270 IDA:IEA zinc ion binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0010628 IEA positive regulation of gene expression
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030163 IMP protein catabolic process
GO:0031647 IMP regulation of protein stability
GO:0034056 IDA estrogen response element binding
GO:0042981 IMP regulation of apoptotic process
GO:0043434 IEA response to peptide hormone
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046777 IEA protein autophosphorylation
GO:0055074 IEA calcium ion homeostasis
GO:0070562 IEA regulation of vitamin D receptor signaling pathway
GO:0070577 IDA lysine-acetylated histone binding
GO:0071391 IDA cellular response to estrogen stimulus
GO:1901796 IEA regulation of signal transduction by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029833 Trim24 tripartite motif-containing 24 protein_coding Mus_musculus

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