C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002Q4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122787-ENSG00000122779 CGP 9606 7:138002324-138589993
GeneTranscriptPositionBiotype
ENSG00000122779 (TRIM24)
tripartite motif containing 24 		ENST00000343526 (TRIM24-001) 138460334-138589993 protein_coding
ENST00000415680 (TRIM24-007) 138460435-138585585 protein_coding
ENST00000464210 (TRIM24-010) 138514400-138525314 processed_transcript
ENST00000485318 (TRIM24-011) 138514400-138515305 processed_transcript
ENST00000493595 (TRIM24-012) 138554770-138573642 processed_transcript
ENST00000497516 (TRIM24-014) 138461065-138570868 processed_transcript
ENST00000620194 (TRIM24-201) 138460549-138584951 protein_coding
ENSG00000122787 (AKR1D1)
aldo-keto reductase family 1, member D1 		ENST00000242375 (AKR1D1-002) 138076477-138117986 protein_coding
ENST00000411726 (AKR1D1-001) 138076467-138117986 protein_coding
ENST00000432161 (AKR1D1-006) 138076432-138116913 protein_coding
ENST00000438242 (AKR1D1-009) 138076518-138097944 protein_coding
ENST00000468877 (AKR1D1-004) 138002324-138116866 processed_transcript
ENST00000470851 (AKR1D1-007) 138091843-138098310 retained_intron
ENSG00000213237 (AC008155.1)
 ENST00000421078 (AC008155.1-001) 138404195-138404523 processed_pseudogene
ENSG00000213238 (AC008155.2)
 ENST00000464337 (AC008155.2-001) 138298088-138298484 processed_pseudogene
ENSG00000214815 (AC008265.2)
 ENST00000399037 (AC008265.2-001) 138440690-138442238 processed_pseudogene
ENSG00000225559 (AC083867.4)
 ENST00000413567 (AC083867.4-001) 138163440-138164637 lincRNA
ENSG00000231923 (AC024082.3)
 ENST00000435250 (AC024082.3-001) 138046654-138047897 processed_pseudogene
ENSG00000231931 (AC024082.4)
 ENST00000434771 (AC024082.4-001) 138060056-138060293 processed_pseudogene
ENSG00000233951 (RCC2P3)
regulator of chromosome condensation 2 pseudogene 3 		ENST00000418112 (RCC2P3-001) 138122202-138124595 processed_pseudogene
ENSG00000234639 (AC009263.2)
 ENST00000441193 (AC009263.2-001) 138022458-138024339 processed_pseudogene
ENSG00000234995 (AC013429.5)
 ENST00000418798 (AC013429.5-001) 138490581-138491361 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0002Q4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038641-ENSMUSG00000029833 CGP 10090 6:37530173-37966296
GeneTranscriptPositionBiotype
ENSMUSG00000029833 (Trim24)
tripartite motif-containing 24 		ENSMUST00000031859 (Trim24-001) 37870811-37966296 protein_coding
ENSMUST00000120238 (Trim24-003) 37900487-37965932 protein_coding
ENSMUST00000120428 (Trim24-002) 37870811-37966296 protein_coding
ENSMUST00000123007 (Trim24-007) 37915221-37928008 retained_intron
ENSMUST00000135387 (Trim24-008) 37948559-37953630 retained_intron
ENSMUST00000149561 (Trim24-004) 37876330-37931484 processed_transcript
ENSMUST00000149828 (Trim24-006) 37870811-37946799 retained_intron
ENSMUST00000153004 (Trim24-005) 37870811-37921505 retained_intron
ENSMUSG00000038641 (Akr1d1)
aldo-keto reductase family 1, member D1 		ENSMUST00000040987 (Akr1d1-001) 37530173-37568815 protein_coding
ENSMUST00000123648 (Akr1d1-003) 37539681-37557508 processed_transcript
ENSMUST00000151256 (Akr1d1-002) 37530222-37554506 protein_coding
ENSMUSG00000080242 (Gm15487)
predicted gene 15487 		ENSMUST00000122373 (Gm15487-001) 37806086-37806550 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Q4_0001ENSG00000122779ENST00000343526ENST00000415680ENST00000464210ENST00000485318ENST00000493595ENST00000497516ENST00000620194ENSG00000122787ENST00000242375ENST00000411726ENST00000432161ENST00000438242ENST00000468877ENST00000470851ENSG00000213237ENST00000421078ENSG00000213238ENST00000464337ENSG00000214815ENST00000399037ENSG00000225559ENST00000413567ENSG00000231923ENST00000435250ENSG00000231931ENST00000434771ENSG00000233951ENST00000418112ENSG00000234639ENST00000441193ENSG00000234995ENST00000418798CIL_0002Q4_0002ENSMUSG00000029833ENSMUST00000031859ENSMUST00000120238ENSMUST00000120428ENSMUST00000123007ENSMUST00000135387ENSMUST00000149561ENSMUST00000149828ENSMUST00000153004ENSMUSG00000038641ENSMUST00000040987ENSMUST00000123648ENSMUST00000151256ENSMUSG00000080242ENSMUST00000122373
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002Q4_0001ENSG00000122779ENST00000343526ENST00000415680ENST00000464210ENST00000497516ENST00000620194ENSG00000122787ENST00000242375ENST00000411726ENST00000432161ENST00000468877ENSG00000213237ENST00000421078ENSG00000213238ENST00000464337ENSG00000214815ENST00000399037ENSG00000225559ENST00000413567ENSG00000231923ENST00000435250ENSG00000231931ENST00000434771ENSG00000233951ENST00000418112ENSG00000234639ENST00000441193ENSG00000234995ENST00000418798CIL_0002Q4_0002ENSMUSG00000029833ENSMUST00000031859ENSMUST00000120238ENSMUST00000120428ENSMUST00000135387ENSMUST00000149828ENSMUST00000153004ENSMUSG00000038641ENSMUST00000040987ENSMUST00000123648ENSMUST00000151256ENSMUSG00000080242ENSMUST00000122373
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122779 ENST00000343526 0.850±0.00 N/A N/A 0.430±0.00 0.317±0.00 0.437±0.20 0.335±0.10 N/A 0.571±0.01 0.184±0.00 N/A 2.307±0.93 0.357±0.09 0.975±0.00
ENST00000415680 5.056±0.00 4.254±0.00 0.697±0.00 2.438±1.42 2.371±1.17 1.950±0.72 1.882±1.33 3.592±1.79 2.241±1.81 1.831±0.57 8.381±0.00 8.433±5.17 3.865±1.46 14.383±2.06
ENST00000464210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.767±0.00
ENST00000485318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497516 N/A N/A 1.708±0.00 1.177±0.00 N/A 1.670±0.00 0.845±0.00 2.639±0.00 N/A N/A 0.784±0.00 N/A N/A N/A
ENST00000620194 N/A N/A N/A 1.712±0.00 N/A 1.229±0.00 0.396±0.00 2.559±0.00 1.963±0.00 N/A 1.328±0.00 3.685±0.00 N/A N/A
ENSG00000122787 ENST00000242375 N/A N/A N/A 0.032±0.00 N/A N/A N/A 36.425±0.00 5.512±0.00 N/A N/A N/A N/A 0.218±0.00
ENST00000411726 0.033±0.00 N/A 0.020±0.00 0.028±0.00 N/A N/A 0.004±0.00 0.041±0.00 N/A N/A N/A 0.010±0.00 N/A N/A
ENST00000432161 N/A N/A N/A N/A 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.23
ENST00000438242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A 0.834±0.04
ENST00000470851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213237 ENST00000421078 0.274±0.00 0.900±0.00 N/A 0.066±0.00 0.069±0.00 0.123±0.00 N/A 0.139±0.00 N/A 0.080±0.00 0.060±0.00 0.181±0.00 N/A 0.114±0.00
ENSG00000213238 ENST00000464337 N/A N/A N/A N/A N/A N/A 0.657±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000214815 ENST00000399037 N/A N/A N/A 0.015±0.00 N/A 0.026±0.00 N/A N/A N/A 0.014±0.00 N/A N/A N/A 0.028±0.00
ENSG00000225559 ENST00000413567 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.113±0.00
ENSG00000231923 ENST00000435250 N/A N/A N/A N/A N/A N/A 0.090±0.00 0.015±0.00 N/A N/A N/A N/A N/A 0.042±0.00
ENSG00000231931 ENST00000434771 N/A 0.057±0.00 N/A N/A 0.055±0.00 N/A N/A N/A N/A 0.049±0.00 0.201±0.00 0.930±0.00 N/A 0.153±0.00
ENSG00000233951 ENST00000418112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00
ENSG00000234639 ENST00000441193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.11
ENSG00000234995 ENST00000418798 0.027±0.00 0.070±0.00 N/A N/A N/A 0.037±0.00 N/A 0.369±0.34 N/A 0.099±0.00 N/A 0.105±0.06 N/A 0.037±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029833 ENSMUST00000031859 N/A 1.271±0.04 1.672±0.01 4.193±0.87 2.519±0.42 1.874±0.34 1.640±0.24 2.082±0.98 1.618±0.57 2.099±0.09 5.130±0.96 4.089±0.83 0.854±0.06 12.795±3.69
ENSMUST00000120238 3.262±0.26 N/A N/A 3.804±0.00 2.858±0.17 2.481±0.00 1.423±0.35 2.357±0.63 2.439±0.74 1.247±0.32 N/A 5.000±0.89 1.858±0.00 17.903±3.81
ENSMUST00000120428 3.472±0.87 1.382±0.27 3.279±0.04 8.804±2.12 3.878±0.55 3.462±0.90 1.165±0.00 3.825±1.29 4.178±1.27 2.206±0.18 3.536±0.79 5.510±2.94 3.073±0.96 13.432±3.57
ENSMUST00000123007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135387 4.834±0.66 N/A N/A 9.681±0.00 4.999±1.44 N/A 2.662±0.35 4.043±0.00 N/A 2.481±0.16 N/A 5.094±0.00 N/A N/A
ENSMUST00000149561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149828 N/A 3.743±1.07 N/A N/A 2.526±0.54 2.297±0.55 N/A N/A 2.788±0.56 1.439±0.09 N/A 5.697±2.58 N/A N/A
ENSMUST00000153004 N/A 1.906±0.20 N/A N/A 2.572±0.07 1.643±0.22 N/A N/A N/A 1.264±0.15 N/A 4.064±1.59 N/A N/A
ENSMUSG00000038641 ENSMUST00000040987 0.027±0.01 271.638±89.60 0.008±0.01 0.006±0.00 0.311±0.02 0.075±0.02 0.018±0.01 4.142±2.12 50.837±42.13 0.035±0.01 N/A 0.100±0.07 0.163±0.16 0.016±0.00
ENSMUST00000123648 N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A 0.363±0.00 N/A N/A
ENSMUST00000151256 N/A N/A N/A N/A 0.631±0.27 N/A N/A N/A N/A N/A N/A 0.642±0.00 N/A N/A
ENSMUSG00000080242 ENSMUST00000122373 41.350±20.34 33.439±5.54 3.612±1.27 19.180±14.18 19.439±8.55 13.692±7.06 11.375±3.23 28.579±12.28 7.954±5.74 25.290±1.25 0.554±0.27 51.833±38.99 44.724±49.68 5.803±2.63

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