C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 24
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029833 Trim24 10090 + 6:37870811-37966296 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031859 Trim24-001 37870811-37966296 protein_coding
  ENSMUST00000120238 Trim24-003 37900487-37965932 protein_coding
  ENSMUST00000120428 Trim24-002 37870811-37966296 protein_coding
  ENSMUST00000123007 Trim24-007 37915221-37928008 retained_intron
  ENSMUST00000135387 Trim24-008 37948559-37953630 retained_intron
  ENSMUST00000149561 Trim24-004 37876330-37931484 processed_transcript
  ENSMUST00000149828 Trim24-006 37870811-37946799 retained_intron
  ENSMUST00000153004 Trim24-005 37870811-37921505 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031859ENSMUST00000120238ENSMUST00000120428ENSMUST00000135387ENSMUST00000149828ENSMUST00000153004
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031859 N/A 1.271±0.04 1.672±0.01 4.193±0.87 2.519±0.42 1.874±0.34 1.640±0.24 2.082±0.98 1.618±0.57 2.099±0.09 5.130±0.96 4.089±0.83 0.854±0.06 12.795±3.69
ENSMUST00000120238 3.262±0.26 N/A N/A 3.804±0.00 2.858±0.17 2.481±0.00 1.423±0.35 2.357±0.63 2.439±0.74 1.247±0.32 N/A 5.000±0.89 1.858±0.00 17.903±3.81
ENSMUST00000120428 3.472±0.87 1.382±0.27 3.279±0.04 8.804±2.12 3.878±0.55 3.462±0.90 1.165±0.00 3.825±1.29 4.178±1.27 2.206±0.18 3.536±0.79 5.510±2.94 3.073±0.96 13.432±3.57
ENSMUST00000135387 4.834±0.66 N/A N/A 9.681±0.00 4.999±1.44 N/A 2.662±0.35 4.043±0.00 N/A 2.481±0.16 N/A 5.094±0.00 N/A N/A
ENSMUST00000149828 N/A 3.743±1.07 N/A N/A 2.526±0.54 2.297±0.55 N/A N/A 2.788±0.56 1.439±0.09 N/A 5.697±2.58 N/A N/A
ENSMUST00000153004 N/A 1.906±0.20 N/A N/A 2.572±0.07 1.643±0.22 N/A N/A N/A 1.264±0.15 N/A 4.064±1.59 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q4 CIL_0002Q4_0002 CGP 6:37530173-37966296
CIL_0002Q3 CIL_0002Q3_0002 CGP 6:37870811-38046996

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003682 IDA chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0004672 IDA protein kinase activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005719 IDA nuclear euchromatin
GO:0005726 IDA perichromatin fibrils
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0008270 ISS zinc ion binding
GO:0008285 IGI negative regulation of cell proliferation
GO:0010628 IGI positive regulation of gene expression
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0016922 IDA ligand-dependent nuclear receptor binding
GO:0030163 IMP protein catabolic process
GO:0031647 IMP regulation of protein stability
GO:0034056 ISS estrogen response element binding
GO:0042981 IEA regulation of apoptotic process
GO:0043434 IEA response to peptide hormone
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IGI positive regulation of transcription, DNA-templated
GO:0046777 IDA protein autophosphorylation
GO:0055074 IMP calcium ion homeostasis
GO:0070562 IMP regulation of vitamin D receptor signaling pathway
GO:0070577 ISS lysine-acetylated histone binding
GO:0071391 ISS cellular response to estrogen stimulus
GO:1901796 IGI regulation of signal transduction by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000122779 TRIM24 tripartite motif containing 24 protein_coding Homo_sapiens

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