C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000244763 SSR1-001 ENSG00000124783 9606 - 6:7281143-7313207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000244763
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000244763 5.198±0.00 7.181±0.00 2.690±0.00 4.868±1.78 4.452±0.30 3.856±0.60 1.980±0.48 5.778±1.72 5.897±2.20 3.846±0.41 1.913±0.00 5.182±2.24 6.586±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000817 CIL_000817_0001 VISTA 6:6863717-7465821
CIL_0003S7 CIL_0003S7_0001 CGP 6:7107597-7347446
CIL_0007T6 CIL_0007T6_0001 VISTA 6:7260927-7862502
CIL_00004W CIL_00004W_0001 CGP 6:7268306-7389743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS:IEA endoplasmic reticulum membrane
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0006987 TAS activation of signaling protein activity involved in unfolded protein response
GO:0008284 TAS positive regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0016021 IEA integral component of membrane
GO:0030968 TAS endoplasmic reticulum unfolded protein response
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021864 Ssr1-201 protein_coding Mus_musculus 0 1369
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00005 57
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00005 57
ENSMUST00000020411 Osbpl5-201 protein_coding Mus_musculus 0.0006 53
ENSMUST00000137627 Osbpl5-003 retained_intron Mus_musculus 0.0006 53
ENSMUST00000121409 Osbpl5-002 protein_coding Mus_musculus 0.0006 53
ENSMUST00000119499 Osbpl5-001 protein_coding Mus_musculus 0.0006 53

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