C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB17, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124839 RAB17 9606 - 2:237574322-237601614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264601 RAB17-001 237574322-237591093 protein_coding
  ENST00000392001 RAB17-002 237574322-237591071 nonsense_mediated_decay
  ENST00000409576 RAB17-007 237574327-237590660 protein_coding
  ENST00000409822 RAB17-011 237574738-237590780 protein_coding
  ENST00000411462 RAB17-005 237575458-237590734 protein_coding
  ENST00000414278 RAB17-003 237574355-237590715 nonsense_mediated_decay
  ENST00000416106 RAB17-006 237585403-237590731 processed_transcript
  ENST00000430445 RAB17-008 237576584-237586099 protein_coding
  ENST00000466244 RAB17-009 237574690-237575884 retained_intron
  ENST00000477149 RAB17-004 237574326-237579570 retained_intron
  ENST00000487008 RAB17-010 237590525-237601614 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000264601ENST00000392001ENST00000409576ENST00000414278ENST00000466244ENST00000477149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000264601 N/A N/A 3.624±0.00 0.086±0.00 N/A N/A N/A 10.554±4.19 7.379±0.00 0.551±0.00 N/A 3.540±0.70 3.006±1.55 0.341±0.00
ENST00000392001 N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A 0.529±0.00 N/A N/A N/A N/A
ENST00000409576 N/A N/A 4.626±0.00 N/A N/A N/A N/A 17.106±0.00 1.001±0.00 N/A N/A N/A N/A N/A
ENST00000414278 0.170±0.00 N/A N/A 0.224±0.00 1.207±0.00 1.328±0.00 N/A 33.486±0.00 38.715±0.00 7.670±0.00 N/A 4.459±3.04 8.568±3.65 1.315±0.84
ENST00000466244 N/A 0.760±0.00 N/A 0.236±0.09 0.689±0.00 0.462±0.00 0.430±0.00 N/A N/A N/A 0.068±0.00 4.320±3.27 N/A N/A
ENST00000477149 N/A 0.171±0.00 0.539±0.00 N/A 0.138±0.00 0.261±0.00 0.070±0.00 N/A 0.036±0.00 1.032±0.32 N/A 1.240±1.00 N/A 0.211±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_0000XK CIL_0000XK_0001 CGP 2:237566574-237601614
CIL_0002H4 CIL_0002H4_0001 CGP 2:237574322-237813682

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002415 ISS immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016323 ISS basolateral plasma membrane
GO:0016324 ISS apical plasma membrane
GO:0019003 IDA GDP binding
GO:0030139 IDA endocytic vesicle
GO:0030425 ISS dendrite
GO:0032401 ISS establishment of melanosome localization
GO:0032402 ISS melanosome transport
GO:0032456 ISS endocytic recycling
GO:0042384 IMP cilium assembly
GO:0042470 ISS melanosome
GO:0043025 ISS neuronal cell body
GO:0045056 ISS transcytosis
GO:0046847 ISS filopodium assembly
GO:0050773 ISS regulation of dendrite development
GO:0051489 ISS regulation of filopodium assembly
GO:0051963 ISS regulation of synapse assembly
GO:0055037 ISS recycling endosome
GO:0055038 ISS recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026304 Rab17 RAB17, member RAS oncogene family protein_coding Mus_musculus

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