C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000XK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000071677-ENSG00000124839 CGP 9606 2:237566574-237601614
GeneTranscriptPositionBiotype
ENSG00000124839 (RAB17)
RAB17, member RAS oncogene family 		ENST00000264601 (RAB17-001) 237574322-237591093 protein_coding
ENST00000392001 (RAB17-002) 237574322-237591071 nonsense_mediated_decay
ENST00000409576 (RAB17-007) 237574327-237590660 protein_coding
ENST00000409822 (RAB17-011) 237574738-237590780 protein_coding
ENST00000411462 (RAB17-005) 237575458-237590734 protein_coding
ENST00000414278 (RAB17-003) 237574355-237590715 nonsense_mediated_decay
ENST00000416106 (RAB17-006) 237585403-237590731 processed_transcript
ENST00000430445 (RAB17-008) 237576584-237586099 protein_coding
ENST00000466244 (RAB17-009) 237574690-237575884 retained_intron
ENST00000477149 (RAB17-004) 237574326-237579570 retained_intron
ENST00000487008 (RAB17-010) 237590525-237601614 processed_transcript
ENSG00000234949 (AC104667.3)
 ENST00000452801 (AC104667.3-001) 237591169-237595981 antisense
ENST00000470375 (AC104667.3-002) 237591020-237592006 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0000XK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000090550-ENSMUSG00000026304 CGP 10090 1:90953108-90969661
GeneTranscriptPositionBiotype
ENSMUSG00000026304 (Rab17)
RAB17, member RAS oncogene family 		ENSMUST00000027529 (Rab17-001) 90958133-90969661 protein_coding
ENSMUST00000128226 (Rab17-005) 90958731-90969548 processed_transcript
ENSMUST00000130042 (Rab17-004) 90960001-90969644 protein_coding
ENSMUST00000131428 (Rab17-002) 90958135-90967667 protein_coding
ENSMUST00000135819 (Rab17-003) 90958854-90967617 processed_transcript
ENSMUSG00000090550 (Prlh)
prolactin releasing hormone 		ENSMUST00000166281 (Prlh-001) 90953108-90954027 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XK_0001ENSG00000124839ENST00000264601ENST00000392001ENST00000409576ENST00000409822ENST00000411462ENST00000414278ENST00000416106ENST00000430445ENST00000466244ENST00000477149ENST00000487008ENSG00000234949ENST00000452801ENST00000470375CIL_0000XK_0002ENSMUSG00000026304ENSMUST00000027529ENSMUST00000128226ENSMUST00000130042ENSMUST00000131428ENSMUST00000135819ENSMUSG00000090550ENSMUST00000166281
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XK_0001ENSG00000124839ENST00000264601ENST00000392001ENST00000409576ENST00000414278ENST00000466244ENST00000477149ENSG00000234949ENST00000452801ENST00000470375CIL_0000XK_0002ENSMUSG00000026304ENSMUST00000027529ENSMUST00000128226ENSMUST00000130042ENSMUST00000131428ENSMUST00000135819ENSMUSG00000090550ENSMUST00000166281
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124839 ENST00000264601 N/A N/A 3.624±0.00 0.086±0.00 N/A N/A N/A 10.554±4.19 7.379±0.00 0.551±0.00 N/A 3.540±0.70 3.006±1.55 0.341±0.00
ENST00000392001 N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A 0.529±0.00 N/A N/A N/A N/A
ENST00000409576 N/A N/A 4.626±0.00 N/A N/A N/A N/A 17.106±0.00 1.001±0.00 N/A N/A N/A N/A N/A
ENST00000409822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414278 0.170±0.00 N/A N/A 0.224±0.00 1.207±0.00 1.328±0.00 N/A 33.486±0.00 38.715±0.00 7.670±0.00 N/A 4.459±3.04 8.568±3.65 1.315±0.84
ENST00000416106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466244 N/A 0.760±0.00 N/A 0.236±0.09 0.689±0.00 0.462±0.00 0.430±0.00 N/A N/A N/A 0.068±0.00 4.320±3.27 N/A N/A
ENST00000477149 N/A 0.171±0.00 0.539±0.00 N/A 0.138±0.00 0.261±0.00 0.070±0.00 N/A 0.036±0.00 1.032±0.32 N/A 1.240±1.00 N/A 0.211±0.13
ENST00000487008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234949 ENST00000452801 N/A N/A N/A 0.153±0.11 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470375 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026304 ENSMUST00000027529 0.482±0.02 N/A 1.159±0.04 0.046±0.00 0.708±0.30 3.681±1.68 0.307±0.14 8.858±1.89 4.651±3.63 0.532±0.10 N/A 0.629±0.29 3.294±1.87 0.164±0.00
ENSMUST00000128226 N/A 0.118±0.00 N/A N/A N/A 0.846±0.00 N/A N/A N/A N/A N/A 0.627±0.30 N/A N/A
ENSMUST00000130042 N/A 0.097±0.00 N/A 0.039±0.00 1.276±0.00 N/A 0.233±0.00 N/A N/A 0.457±0.12 0.124±0.01 0.706±0.26 N/A 0.301±0.18
ENSMUST00000131428 0.059±0.00 N/A N/A 0.019±0.00 N/A 1.690±0.00 0.138±0.00 7.239±0.61 1.490±0.00 N/A 0.029±0.01 0.802±0.34 0.943±1.04 0.044±0.00
ENSMUST00000135819 N/A N/A N/A 0.108±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00
ENSMUSG00000090550 ENSMUST00000166281 N/A N/A N/A N/A 0.568±0.00 0.586±0.18 N/A N/A 0.259±0.14 N/A N/A N/A 0.045±0.00 N/A

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