C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB17, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477149 RAB17-004 ENSG00000124839 9606 - 2:237574326-237579570 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartLiverLungOvaryTestisENST00000477149
Transcript ID Adrenal Bladder Breast Colon Heart Liver Lung Ovary Testis
ENST00000477149 0.171±0.00 0.539±0.00 0.138±0.00 0.261±0.00 0.070±0.00 0.036±0.00 1.032±0.32 1.240±1.00 0.211±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_0000XK CIL_0000XK_0001 CGP 2:237566574-237601614
CIL_0002H4 CIL_0002H4_0001 CGP 2:237574322-237813682

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128226 Rab17-005 processed_transcript Mus_musculus 0 200
ENSMUST00000135819 Rab17-003 processed_transcript Mus_musculus 0 200
ENSMUST00000130042 Rab17-004 protein_coding Mus_musculus 0 195
ENSMUST00000131428 Rab17-002 protein_coding Mus_musculus 0 195
ENSMUST00000027529 Rab17-001 protein_coding Mus_musculus 0 195

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