C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB17, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026304 Rab17 10090 - 1:90958133-90969661 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027529 Rab17-001 90958133-90969661 protein_coding
  ENSMUST00000128226 Rab17-005 90958731-90969548 processed_transcript
  ENSMUST00000130042 Rab17-004 90960001-90969644 protein_coding
  ENSMUST00000131428 Rab17-002 90958135-90967667 protein_coding
  ENSMUST00000135819 Rab17-003 90958854-90967617 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027529ENSMUST00000128226ENSMUST00000130042ENSMUST00000131428ENSMUST00000135819
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027529 0.482±0.02 N/A 1.159±0.04 0.046±0.00 0.708±0.30 3.681±1.68 0.307±0.14 8.858±1.89 4.651±3.63 0.532±0.10 N/A 0.629±0.29 3.294±1.87 0.164±0.00
ENSMUST00000128226 N/A 0.118±0.00 N/A N/A N/A 0.846±0.00 N/A N/A N/A N/A N/A 0.627±0.30 N/A N/A
ENSMUST00000130042 N/A 0.097±0.00 N/A 0.039±0.00 1.276±0.00 N/A 0.233±0.00 N/A N/A 0.457±0.12 0.124±0.01 0.706±0.26 N/A 0.301±0.18
ENSMUST00000131428 0.059±0.00 N/A N/A 0.019±0.00 N/A 1.690±0.00 0.138±0.00 7.239±0.61 1.490±0.00 N/A 0.029±0.01 0.802±0.34 0.943±1.04 0.044±0.00
ENSMUST00000135819 N/A N/A N/A 0.108±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0002 VISTA 1:90453497-91055787
CIL_0007RW CIL_0007RW_0002 VISTA 1:90676298-91284359
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0000XK CIL_0000XK_0002 CGP 1:90953108-90969661
CIL_0002H4 CIL_0002H4_0002 CGP 1:90958133-91128944

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002415 IMP immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016323 IDA basolateral plasma membrane
GO:0016324 IDA apical plasma membrane
GO:0019003 ISS GDP binding
GO:0030139 IEA endocytic vesicle
GO:0030425 IDA dendrite
GO:0032401 IMP establishment of melanosome localization
GO:0032402 IMP melanosome transport
GO:0032456 IMP endocytic recycling
GO:0042384 IEA cilium assembly
GO:0042470 IDA melanosome
GO:0043025 IDA neuronal cell body
GO:0045056 IMP transcytosis
GO:0046847 IMP filopodium assembly
GO:0050773 IMP regulation of dendrite development
GO:0051489 IMP regulation of filopodium assembly
GO:0051963 IMP regulation of synapse assembly
GO:0055037 IDA recycling endosome
GO:0055038 IDA recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000124839 RAB17 RAB17, member RAS oncogene family protein_coding Homo_sapiens

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