C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB17, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264601 RAB17-001 ENSG00000124839 9606 - 2:237574322-237591093 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungOvaryPlacentaTestisENST00000264601
Transcript ID Bladder Brain Kidney Liver Lung Ovary Placenta Testis
ENST00000264601 3.624±0.00 0.086±0.00 10.554±4.19 7.379±0.00 0.551±0.00 3.540±0.70 3.006±1.55 0.341±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0007RW CIL_0007RW_0001 VISTA 2:237313736-237917924
CIL_0000XK CIL_0000XK_0001 CGP 2:237566574-237601614
CIL_0002H4 CIL_0002H4_0001 CGP 2:237574322-237813682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002415 ISS immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor
GO:0003924 IDA:IEA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IDA:IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IDA:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016323 ISS basolateral plasma membrane
GO:0016324 ISS apical plasma membrane
GO:0019003 IDA GDP binding
GO:0030139 IDA endocytic vesicle
GO:0030425 ISS dendrite
GO:0032401 ISS establishment of melanosome localization
GO:0032402 ISS melanosome transport
GO:0032456 ISS endocytic recycling
GO:0042384 IMP cilium assembly
GO:0042470 ISS melanosome
GO:0043025 ISS neuronal cell body
GO:0045056 ISS transcytosis
GO:0046847 ISS filopodium assembly
GO:0050773 ISS regulation of dendrite development
GO:0051489 ISS regulation of filopodium assembly
GO:0051963 ISS regulation of synapse assembly
GO:0055037 ISS recycling endosome
GO:0055038 ISS recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027529 Rab17-001 protein_coding Mus_musculus 0 477
ENSMUST00000131428 Rab17-002 protein_coding Mus_musculus 0 475
ENSMUST00000128226 Rab17-005 processed_transcript Mus_musculus 0 414
ENSMUST00000135819 Rab17-003 processed_transcript Mus_musculus 0 414
ENSMUST00000130042 Rab17-004 protein_coding Mus_musculus 0 379

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