C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125285 SOX21 9606 - 13:94709622-94712399 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376945 SOX21-001 94709622-94712399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryTestisENST00000376945
Transcript ID Brain Lung Ovary Testis
ENST00000376945 0.740±0.17 0.130±0.06 0.205±0.05 0.142±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000890 CIL_000890_0001 VISTA 13:94361598-94963187
CIL_0008KC CIL_0008KC_0001 VISTA 13:94406009-95007763
CIL_0002F7 CIL_0002F7_0001 CGP 13:94601903-94712399
CIL_0007KH CIL_0007KH_0001 UCNEbase 13:94662058-95022632
CIL_0008M7 CIL_0008M7_0001 VISTA 13:94666210-95267565
CIL_0008LV CIL_0008LV_0001 VISTA 13:94666262-95267596

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 NAS sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001942 IEA hair follicle development
GO:0003677 ISS DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0006366 NAS transcription from RNA polymerase II promoter
GO:0042633 IEA hair cycle
GO:0043588 IEA skin development
GO:0048863 IDA stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008540 sox21b SRY-box containing gene 21 b protein_coding Danio_rerio
ENSMUSG00000061517 Sox21 SRY (sex determining region Y)-box 21 protein_coding Mus_musculus

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