C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007KH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX21 UCNEbase 9606 13:94662058-95022632
GeneTranscriptPositionBiotype
ENSG00000125257 (ABCC4)
ATP-binding cassette, sub-family C (CFTR/MRP), member 4 		ENST00000376887 (ABCC4-001) 95019829-95301429 protein_coding
ENST00000467685 (ABCC4-005) 95074216-95076019 processed_transcript
ENST00000471041 (ABCC4-003) 95043680-95055819 processed_transcript
ENST00000474158 (ABCC4-004) 95071730-95073776 processed_transcript
ENST00000484109 (ABCC4-002) 95043320-95044329 processed_transcript
ENST00000536256 (ABCC4-006) 95095769-95301433 protein_coding
ENSG00000125285 (SOX21)
SRY (sex determining region Y)-box 21 		ENST00000376945 (SOX21-001) 94709622-94712399 protein_coding
ENSG00000227640 (SOX21-AS1)
SOX21 antisense RNA 1 (head to head) 		ENST00000438290 (SOX21-AS1-001) 94712716-94716246 lincRNA
ENSG00000235768 (BRD7P5)
bromodomain containing 7 pseudogene 5 		ENST00000299197 (BRD7P5-001) 94757451-94759272 processed_pseudogene
ENSG00000237924 (RPL21P112)
ribosomal protein L21 pseudogene 112 		ENST00000434403 (RPL21P112-001) 94760553-94761015 processed_pseudogene
ENSG00000238230 (LINC00391)
long intergenic non-protein coding RNA 391 		ENST00000433569 (LINC00391-001) 94699694-94702862 lincRNA
ENSG00000252335 (RNU6-62P)
RNA, U6 small nuclear 62, pseudogene 		ENST00000516526 (RNU6-62P-201) 95019235-95019336 snRNA
ENSG00000260962 (LINC00557)
long intergenic non-protein coding RNA 557 		ENST00000563184 (LINC00557-001) 94960041-94961319 lincRNA
ENSG00000274168 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000470538 (Metazoa_SRP.1-270) 94699223-94699502 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007KH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX21 UCNEbase 10090 14:118194320-118485392
GeneTranscriptPositionBiotype
ENSMUSG00000032849 (Abcc4)
ATP-binding cassette, sub-family C (CFTR/MRP), member 4 		ENSMUST00000036554 (Abcc4-201) 118482692-118706219 protein_coding
ENSMUST00000166646 (Abcc4-202) 118482692-118706219 protein_coding
ENSMUSG00000061517 (Sox21)
SRY (sex determining region Y)-box 21 		ENSMUST00000170662 (Sox21-001) 118233232-118237030 protein_coding
ENSMUSG00000090534 (Gm4675)
predicted gene 4675 		ENSMUST00000163396 (Gm4675-002) 118236880-118261199 processed_transcript
ENSMUST00000164755 (Gm4675-001) 118236232-118238759 processed_transcript
ENSMUST00000169262 (Gm4675-003) 118253716-118254258 processed_transcript
ENSMUSG00000092109 (Gm9376)
predicted gene 9376 		ENSMUST00000171107 (Gm9376-201) 118267158-118267768 protein_coding
ENSMUSG00000096997 (Gm26791)
predicted gene, 26791 		ENSMUST00000180942 (Gm26791-001) 118363732-118384768 lincRNA
ENSMUSG00000099911 (RP24-66N5.1)
RIKEN cDNA 1700044C05 gene 		ENSMUST00000186060 (RP24-66N5.1-001) 118365878-118398170 lincRNA

Mus musculus Ensembl (GRCm38)

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CIL_0007KH_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX21 UCNEbase 7955 9:54990397-55145709
GeneTranscriptPositionBiotype
ENSDARG00000008540 (sox21b)
SRY-box containing gene 21 b 		ENSDART00000003310 (sox21b-001) 55102198-55103564 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KH_0001ENSG00000125257ENST00000376887ENST00000467685ENST00000471041ENST00000474158ENST00000484109ENST00000536256ENSG00000125285ENST00000376945ENSG00000227640ENST00000438290ENSG00000235768ENST00000299197ENSG00000237924ENST00000434403ENSG00000238230ENST00000433569ENSG00000252335ENST00000516526ENSG00000260962ENST00000563184ENSG00000274168ENST00000470538CIL_0007KH_0002ENSMUSG00000032849ENSMUST00000036554ENSMUST00000166646ENSMUSG00000061517ENSMUST00000170662ENSMUSG00000090534ENSMUST00000163396ENSMUST00000164755ENSMUST00000169262ENSMUSG00000092109ENSMUST00000171107ENSMUSG00000096997ENSMUST00000180942ENSMUSG00000099911ENSMUST00000186060CIL_0007KH_0003ENSDARG00000008540ENSDART00000003310
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007KH_0001ENSG00000125257ENST00000376887ENST00000536256ENSG00000125285ENST00000376945ENSG00000227640ENST00000438290ENSG00000235768ENST00000299197ENSG00000237924ENST00000434403ENSG00000238230ENST00000433569ENSG00000252335ENST00000516526ENSG00000260962ENST00000563184ENSG00000274168ENST00000470538CIL_0007KH_0002ENSMUSG00000032849ENSMUST00000036554ENSMUST00000166646ENSMUSG00000061517ENSMUST00000170662ENSMUSG00000090534ENSMUST00000163396ENSMUST00000164755ENSMUSG00000092109ENSMUST00000171107ENSMUSG00000096997ENSMUST00000180942ENSMUSG00000099911ENSMUST00000186060CIL_0007KH_0003ENSDARG00000008540ENSDART00000003310
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125257 ENST00000376887 0.719±0.00 1.661±0.00 0.735±0.00 0.839±0.53 0.378±0.00 2.605±0.42 0.906±0.00 2.679±2.64 0.712±0.61 1.740±0.12 2.247±0.00 3.286±1.23 0.413±0.24 2.011±1.03
ENST00000467685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474158 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536256 N/A N/A N/A N/A N/A N/A N/A 0.863±0.00 0.069±0.00 N/A 0.478±0.00 2.260±0.56 N/A N/A
ENSG00000125285 ENST00000376945 N/A N/A N/A 0.740±0.17 N/A N/A N/A N/A N/A 0.130±0.06 N/A 0.205±0.05 N/A 0.142±0.12
ENSG00000227640 ENST00000438290 N/A N/A N/A 0.873±0.07 N/A 0.009±0.00 0.006±0.00 N/A N/A 0.148±0.00 0.003±0.00 0.102±0.09 N/A 0.098±0.01
ENSG00000235768 ENST00000299197 N/A N/A N/A N/A 0.014±0.00 N/A 0.006±0.00 N/A N/A N/A N/A 0.015±0.00 0.008±0.00 0.120±0.10
ENSG00000237924 ENST00000434403 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A 0.024±0.00 0.072±0.00 N/A 0.052±0.00 N/A 0.093±0.00
ENSG00000238230 ENST00000433569 N/A N/A N/A 0.122±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000252335 ENST00000516526 N/A N/A N/A N/A N/A N/A N/A 0.895±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000260962 ENST00000563184 N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.023±0.00
ENSG00000274168 ENST00000470538 0.167±0.00 N/A N/A 0.304±0.18 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032849 ENSMUST00000036554 4.024±1.88 3.168±0.70 16.431±6.98 0.494±0.04 2.254±0.42 2.943±0.21 2.231±0.30 12.108±3.75 0.820±0.40 3.079±0.58 2.119±0.57 3.368±1.09 3.547±3.19 0.411±0.15
ENSMUST00000166646 0.627±0.00 N/A N/A 0.949±0.00 N/A N/A N/A N/A 0.202±0.00 N/A 0.914±0.10 2.467±0.95 0.670±0.22 0.543±0.00
ENSMUSG00000061517 ENSMUST00000170662 N/A 0.047±0.05 0.035±0.01 6.791±3.95 0.072±0.05 0.980±0.10 0.075±0.00 0.008±0.00 0.008±0.00 0.389±0.12 0.028±0.01 0.153±0.05 0.583±0.53 0.014±0.01
ENSMUSG00000090534 ENSMUST00000163396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.441±0.00 N/A 0.107±0.00
ENSMUST00000164755 N/A 0.093±0.04 0.010±0.00 2.662±0.66 0.121±0.05 1.017±0.21 0.056±0.01 N/A 0.009±0.00 0.291±0.06 0.023±0.00 0.154±0.09 0.055±0.04 N/A
ENSMUST00000169262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092109 ENSMUST00000171107 N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.065±0.01
ENSMUSG00000096997 ENSMUST00000180942 N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A 0.211±0.18 N/A 0.563±0.12
ENSMUSG00000099911 ENSMUST00000186060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.929±0.57
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008540 ENSDART00000003310 N/A N/A N/A 5.832±1.76 N/A N/A 0.053±0.00 0.064±0.00 N/A N/A 0.388±0.00 N/A N/A N/A

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