C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376945 SOX21-001 ENSG00000125285 9606 - 13:94709622-94712399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryTestisENST00000376945
Transcript ID Brain Lung Ovary Testis
ENST00000376945 0.740±0.17 0.130±0.06 0.205±0.05 0.142±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000890 CIL_000890_0001 VISTA 13:94361598-94963187
CIL_0008KC CIL_0008KC_0001 VISTA 13:94406009-95007763
CIL_0002F7 CIL_0002F7_0001 CGP 13:94601903-94712399
CIL_0007KH CIL_0007KH_0001 UCNEbase 13:94662058-95022632
CIL_0008M7 CIL_0008M7_0001 VISTA 13:94666210-95267565
CIL_0008LV CIL_0008LV_0001 VISTA 13:94666262-95267596

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 NAS sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001942 IEA hair follicle development
GO:0003677 ISS DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0006366 NAS transcription from RNA polymerase II promoter
GO:0042633 IEA hair cycle
GO:0043588 IEA skin development
GO:0048863 IDA stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170662 Sox21-001 protein_coding Mus_musculus 0 1611
ENSMUST00000135107 Sox3-001 protein_coding Mus_musculus 0 348
ENSMUST00000180353 Sox1-001 protein_coding Mus_musculus 0 318
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0 315
ENSMUST00000054819 Sox14-001 protein_coding Mus_musculus 0 302
ENSDART00000003310 sox21b-001 protein_coding Danio_rerio 0 274
ENSMUST00000183065 Sox14-002 protein_coding Mus_musculus 0 272
ENSDART00000058910 sox19b-001 protein_coding Danio_rerio 0 248
ENSDART00000049339 sox21a-001 protein_coding Danio_rerio 0 209
ENSMUST00000047373 Sox15-001 protein_coding Mus_musculus 1e-35 156
ENSMUST00000079063 Sox11-001 protein_coding Mus_musculus 0.00000000000002 86
ENSMUST00000054491 Sox18-001 protein_coding Mus_musculus 0.0000003 62

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