C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SRY (sex determining region Y)-box 21
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061517 Sox21 10090 - 14:118233232-118237030 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000170662 Sox21-001 118233232-118237030 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170662
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170662 0.047±0.05 0.035±0.01 6.791±3.95 0.072±0.05 0.980±0.10 0.075±0.00 0.008±0.00 0.008±0.00 0.389±0.12 0.028±0.01 0.153±0.05 0.583±0.53 0.014±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000890 CIL_000890_0002 VISTA 14:117893836-118495430
CIL_0008KC CIL_0008KC_0002 VISTA 14:117929617-118531411
CIL_0008M7 CIL_0008M7_0002 VISTA 14:118135485-118736834
CIL_0008LV CIL_0008LV_0002 VISTA 14:118135538-118736865
CIL_0002F7 CIL_0002F7_0002 CGP 14:118137127-118237030
CIL_0007KH CIL_0007KH_0002 UCNEbase 14:118194320-118485392

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001942 IMP hair follicle development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0042633 IMP hair cycle
GO:0043588 IMP skin development
GO:0048863 IEA stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008540 sox21b SRY-box containing gene 21 b protein_coding Danio_rerio
ENSG00000125285 SOX21 SRY (sex determining region Y)-box 21 protein_coding Homo_sapiens

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