C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 85kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125450 NUP85 9606 + 17:75205659-75235758 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000245544 NUP85-001 75205691-75235758 protein_coding
  ENST00000449421 NUP85-003 75205709-75226978 processed_transcript
  ENST00000540768 NUP85-006 75228161-75235757 protein_coding
  ENST00000577208 NUP85-010 75205720-75216344 processed_transcript
  ENST00000577561 NUP85-013 75218293-75225949 retained_intron
  ENST00000577645 NUP85-014 75225368-75231977 retained_intron
  ENST00000578294 NUP85-020 75232920-75234782 retained_intron
  ENST00000578830 NUP85-012 75215801-75232954 nonsense_mediated_decay
  ENST00000578987 NUP85-021 75234667-75235757 nonsense_mediated_decay
  ENST00000579298 NUP85-004 75205720-75235691 protein_coding
  ENST00000579324 NUP85-002 75205707-75235757 protein_coding
  ENST00000579557 NUP85-025 75225103-75232952 protein_coding
  ENST00000579838 NUP85-023 75234704-75235757 protein_coding
  ENST00000579900 NUP85-024 75233125-75235758 protein_coding
  ENST00000580879 NUP85-018 75226108-75232947 nonsense_mediated_decay
  ENST00000581104 NUP85-005 75205720-75235710 nonsense_mediated_decay
  ENST00000581335 NUP85-017 75227948-75229126 processed_transcript
  ENST00000582681 NUP85-019 75231138-75232941 retained_intron
  ENST00000582833 NUP85-007 75205707-75208620 processed_transcript
  ENST00000583070 NUP85-016 75225391-75235152 protein_coding
  ENST00000583548 NUP85-009 75205720-75216365 processed_transcript
  ENST00000583569 NUP85-008 75205659-75215775 protein_coding
  ENST00000583877 NUP85-011 75218208-75226157 protein_coding
  ENST00000583948 NUP85-015 75205690-75226058 processed_transcript
  ENST00000584155 NUP85-022 75234753-75235752 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000245544ENST00000540768ENST00000577208ENST00000577561ENST00000577645ENST00000578294ENST00000578830ENST00000578987ENST00000579298ENST00000579324ENST00000579557ENST00000581104ENST00000583070ENST00000583877ENST00000583948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000245544 2.251±0.00 N/A N/A N/A 2.052±1.20 2.051±1.46 1.979±0.00 N/A N/A N/A N/A 7.430±0.18 6.145±5.80 12.816±0.00
ENST00000540768 N/A 4.180±0.00 N/A N/A 1.704±1.18 N/A 1.015±0.81 0.310±0.00 N/A 1.978±0.00 N/A 4.852±0.00 N/A 3.820±0.00
ENST00000577208 N/A N/A N/A 3.698±0.00 N/A N/A 0.999±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000577561 N/A N/A 0.822±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577645 N/A N/A N/A 1.256±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.499±0.00 N/A N/A N/A
ENST00000578830 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.786±0.00 N/A N/A N/A N/A
ENST00000578987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.942±0.00
ENST00000579298 N/A N/A 0.260±0.00 1.456±0.00 N/A N/A N/A N/A N/A N/A 3.135±0.00 2.528±1.05 4.242±0.00 N/A
ENST00000579324 2.351±0.00 3.854±0.00 N/A N/A N/A N/A N/A N/A 2.443±0.00 N/A 2.241±0.00 N/A 2.197±0.66 N/A
ENST00000579557 N/A N/A 0.621±0.00 N/A N/A N/A N/A N/A N/A N/A 4.396±0.00 2.644±0.00 N/A N/A
ENST00000581104 N/A 5.387±0.00 N/A 1.412±0.00 3.042±0.00 N/A 1.052±0.57 4.733±0.00 1.501±0.00 2.281±0.00 N/A 1.025±0.00 N/A 3.493±0.00
ENST00000583070 5.632±0.00 N/A 0.542±0.00 4.576±0.00 N/A 7.226±0.00 N/A 7.989±7.03 3.459±0.00 N/A N/A N/A 7.308±1.10 N/A
ENST00000583877 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.790±0.00 N/A N/A N/A N/A
ENST00000583948 N/A N/A N/A 1.482±0.00 0.871±0.00 2.730±0.00 0.545±0.00 1.850±0.00 1.034±0.00 3.057±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IA CIL_0007IA_0001 CGP 17:75165586-75235758
CIL_0007IW CIL_0007IW_0001 CGP 17:75205659-75262363

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0005515 IPI protein binding
GO:0005635 TAS nuclear envelope
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005975 TAS carbohydrate metabolic process
GO:0006935 IEA chemotaxis
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030032 IEA lamellipodium assembly
GO:0031080 IDA nuclear pore outer ring
GO:0044281 TAS small molecule metabolic process
GO:0048246 IEA macrophage chemotaxis
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046061 nup85 nucleoporin 85 protein_coding Danio_rerio
ENSMUSG00000020739 Nup85 nucleoporin 85 protein_coding Mus_musculus

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