C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 85kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000245544 NUP85-001 ENSG00000125450 9606 + 17:75205691-75235758 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartOvaryPlacentaTestisENST00000245544
Transcript ID Adipose Breast Colon Heart Ovary Placenta Testis
ENST00000245544 2.251±0.00 2.052±1.20 2.051±1.46 1.979±0.00 7.430±0.18 6.145±5.80 12.816±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IA CIL_0007IA_0001 CGP 17:75165586-75235758
CIL_0007IW CIL_0007IW_0001 CGP 17:75205659-75262363

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0005515 IPI protein binding
GO:0005635 TAS nuclear envelope
GO:0005829 TAS cytosol
GO:0005856 IEA cytoskeleton
GO:0005975 TAS carbohydrate metabolic process
GO:0006935 IEA chemotaxis
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0030032 IEA lamellipodium assembly
GO:0031080 IDA nuclear pore outer ring
GO:0044281 TAS small molecule metabolic process
GO:0048246 IEA macrophage chemotaxis
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021085 Nup85-001 protein_coding Mus_musculus 0 2202
ENSMUST00000140986 Nup85-002 protein_coding Mus_musculus 0 894
ENSMUST00000135893 Nup85-005 processed_transcript Mus_musculus 0 560
ENSMUST00000144473 Nup85-003 protein_coding Mus_musculus 0 479

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