C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 85kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000581104 NUP85-005 ENSG00000125450 9606 + 17:75205720-75235710 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungOvaryTestisENST00000581104
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Ovary Testis
ENST00000581104 5.387±0.00 1.412±0.00 3.042±0.00 1.052±0.57 4.733±0.00 1.501±0.00 2.281±0.00 1.025±0.00 3.493±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0007IA CIL_0007IA_0001 CGP 17:75165586-75235758
CIL_0007IW CIL_0007IW_0001 CGP 17:75205659-75262363

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021085 Nup85-001 protein_coding Mus_musculus 0 1275
ENSMUST00000140986 Nup85-002 protein_coding Mus_musculus 0 894
ENSMUST00000135893 Nup85-005 processed_transcript Mus_musculus 0 566
ENSMUST00000144473 Nup85-003 protein_coding Mus_musculus 0 479

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