C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 85
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020739 Nup85 10090 + 11:115564434-115583985 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021085 Nup85-001 115564434-115583985 protein_coding
  ENSMUST00000127126 Nup85-009 115581096-115582034 processed_transcript
  ENSMUST00000128745 Nup85-008 115581748-115582278 processed_transcript
  ENSMUST00000134209 Nup85-007 115583057-115583783 processed_transcript
  ENSMUST00000135893 Nup85-005 115564525-115569891 processed_transcript
  ENSMUST00000138998 Nup85-004 115581641-115583906 processed_transcript
  ENSMUST00000140986 Nup85-002 115577984-115582039 protein_coding
  ENSMUST00000143351 Nup85-006 115580504-115581419 processed_transcript
  ENSMUST00000144473 Nup85-003 115570115-115581843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021085ENSMUST00000138998ENSMUST00000140986ENSMUST00000144473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021085 9.768±1.81 6.887±2.45 21.037±0.55 21.868±1.42 10.344±3.67 7.314±2.28 6.292±1.56 7.438±2.12 24.548±21.91 9.301±2.83 7.799±1.13 16.873±6.52 20.766±17.21 11.045±2.89
ENSMUST00000138998 N/A N/A N/A 9.215±0.00 14.772±6.97 N/A 4.719±0.48 6.831±0.72 N/A 7.315±0.00 4.508±0.00 16.423±1.15 18.065±13.22 9.444±0.38
ENSMUST00000140986 N/A 6.746±0.00 N/A N/A 21.497±0.00 N/A N/A N/A N/A N/A N/A 9.940±0.00 N/A N/A
ENSMUST00000144473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.342±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IA CIL_0007IA_0002 CGP 11:115523102-115583985
CIL_0007IW CIL_0007IW_0002 CGP 11:115564434-115604051

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0005515 IEA protein binding
GO:0005737 ISA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 ISA plasma membrane
GO:0006935 IDA chemotaxis
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019221 ISA cytokine-mediated signaling pathway
GO:0030032 IDA lamellipodium assembly
GO:0031080 ISS nuclear pore outer ring
GO:0031727 ISA CCR2 chemokine receptor binding
GO:0048246 IDA macrophage chemotaxis
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046061 nup85 nucleoporin 85 protein_coding Danio_rerio
ENSG00000125450 NUP85 nucleoporin 85kDa protein_coding Homo_sapiens

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