C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409656 PSD4-004 ENSG00000125637 9606 + 2:113185044-113201566 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000409656
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000409656 0.442±0.00 1.000±0.00 1.081±0.00 1.906±0.00 0.189±0.09 0.646±0.00 1.307±0.00 0.076±0.00 10.556±6.79 6.682±0.00 1.946±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000191 CIL_000191_0001 CGP 2:113107214-113209396
CIL_000196 CIL_000196_0001 CGP 2:113157325-113278950

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166388 Psd4-201 protein_coding Mus_musculus 0 1524
ENSMUST00000056641 Psd4-002 protein_coding Mus_musculus 0 1524
ENSMUST00000102942 Psd4-001 protein_coding Mus_musculus 0 1524
ENSMUST00000140303 Psd4-009 processed_transcript Mus_musculus 0 276
ENSMUST00000132924 Psd4-008 processed_transcript Mus_musculus 0 211

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