C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000245796 PSD4-001 ENSG00000125637 9606 + 2:113173971-113203237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000245796
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000245796 0.229±0.00 8.401±0.00 0.523±0.41 0.791±0.26 0.840±0.50 0.235±0.00 3.298±1.86 5.880±0.00 2.388±0.95 4.893±4.32 7.218±0.83 0.687±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000191 CIL_000191_0001 CGP 2:113107214-113209396
CIL_000196 CIL_000196_0001 CGP 2:113157325-113278950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0005886 IEA plasma membrane
GO:0016020 IDA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166388 Psd4-201 protein_coding Mus_musculus 0 1524
ENSMUST00000056641 Psd4-002 protein_coding Mus_musculus 0 1524
ENSMUST00000102942 Psd4-001 protein_coding Mus_musculus 0 1524
ENSMUST00000140303 Psd4-009 processed_transcript Mus_musculus 0 276
ENSMUST00000132924 Psd4-008 processed_transcript Mus_musculus 0 211
ENSMUST00000127242 Psd4-007 processed_transcript Mus_musculus 9e-30 137

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